Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21455

Experiment: L-Citrulline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS21450 and RR42_RS21455 are separated by 12 nucleotidesRR42_RS21455 and RR42_RS21460 are separated by 36 nucleotides RR42_RS21450: RR42_RS21450 - hypothetical protein, at 143,233 to 143,598 _RS21450 RR42_RS21455: RR42_RS21455 - transposase, at 143,611 to 144,705 _RS21455 RR42_RS21460: RR42_RS21460 - hypothetical protein, at 144,742 to 144,957 _RS21460 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1at 142.667 kb on + strandat 142.668 kb on - strandat 142.668 kb on - strandat 142.696 kb on + strandat 142.697 kb on - strandat 142.844 kb on - strandat 142.844 kb on - strandat 142.855 kb on + strandat 142.891 kb on + strandat 142.891 kb on + strandat 142.891 kb on + strandat 142.892 kb on - strandat 142.894 kb on - strandat 142.894 kb on - strandat 142.960 kb on + strandat 143.016 kb on + strandat 143.060 kb on + strandat 143.060 kb on + strandat 143.061 kb on - strandat 143.156 kb on + strandat 143.261 kb on + strandat 143.261 kb on + strandat 143.275 kb on - strand, within RR42_RS21450at 143.309 kb on + strand, within RR42_RS21450at 143.570 kb on + strandat 143.571 kb on - strandat 143.722 kb on + strand, within RR42_RS21455at 143.741 kb on - strand, within RR42_RS21455at 143.975 kb on - strand, within RR42_RS21455at 144.191 kb on - strand, within RR42_RS21455at 144.636 kb on + strandat 144.636 kb on + strandat 144.766 kb on + strand, within RR42_RS21460at 144.767 kb on - strand, within RR42_RS21460at 144.827 kb on + strand, within RR42_RS21460at 144.828 kb on - strand, within RR42_RS21460at 144.880 kb on + strand, within RR42_RS21460at 144.880 kb on + strand, within RR42_RS21460at 145.012 kb on - strandat 145.100 kb on + strandat 145.100 kb on + strandat 145.100 kb on + strandat 145.100 kb on + strandat 145.103 kb on - strandat 145.192 kb on + strandat 145.192 kb on + strandat 145.192 kb on + strandat 145.204 kb on + strandat 145.204 kb on + strandat 145.205 kb on - strandat 145.243 kb on - strandat 145.326 kb on - strandat 145.561 kb on + strandat 145.593 kb on + strandat 145.595 kb on + strandat 145.640 kb on - strandat 145.668 kb on + strandat 145.686 kb on + strandat 145.687 kb on - strandat 145.700 kb on + strandat 145.700 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
remove
142,667 + -1.9
142,668 - -0.6
142,668 - +0.4
142,696 + -0.6
142,697 - +0.3
142,844 - +0.1
142,844 - -0.3
142,855 + +0.8
142,891 + -0.8
142,891 + -0.1
142,891 + +1.1
142,892 - +0.0
142,894 - -0.2
142,894 - +0.4
142,960 + -0.2
143,016 + +0.2
143,060 + -0.4
143,060 + +0.3
143,061 - -0.1
143,156 + +0.5
143,261 + +1.1
143,261 + +0.3
143,275 - RR42_RS21450 0.11 +0.3
143,309 + RR42_RS21450 0.21 +1.7
143,570 + +0.4
143,571 - -1.0
143,722 + RR42_RS21455 0.10 +0.5
143,741 - RR42_RS21455 0.12 +1.2
143,975 - RR42_RS21455 0.33 +1.5
144,191 - RR42_RS21455 0.53 +0.0
144,636 + -0.4
144,636 + +0.4
144,766 + RR42_RS21460 0.11 -0.5
144,767 - RR42_RS21460 0.12 +0.3
144,827 + RR42_RS21460 0.39 -0.1
144,828 - RR42_RS21460 0.40 +1.0
144,880 + RR42_RS21460 0.64 +0.9
144,880 + RR42_RS21460 0.64 +0.6
145,012 - +0.1
145,100 + +0.5
145,100 + +1.2
145,100 + -1.3
145,100 + +0.3
145,103 - +0.5
145,192 + +0.2
145,192 + -0.2
145,192 + +0.0
145,204 + -0.5
145,204 + -0.3
145,205 - +0.1
145,243 - +0.1
145,326 - +0.6
145,561 + +0.3
145,593 + +0.6
145,595 + +0.2
145,640 - -0.1
145,668 + -0.9
145,686 + +0.7
145,687 - +0.0
145,700 + +0.2
145,700 + -0.2

Or see this region's nucleotide sequence