Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20120 and RR42_RS20125 are separated by 145 nucleotides RR42_RS20125 and RR42_RS20130 are separated by 203 nucleotides
RR42_RS20120: RR42_RS20120 - amino acid ABC transporter substrate-binding protein, at 4,347,995 to 4,349,146
_RS20120
RR42_RS20125: RR42_RS20125 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) , at 4,349,292 to 4,353,293
_RS20125
RR42_RS20130: RR42_RS20130 - primosome assembly protein PriA, at 4,353,497 to 4,355,800
_RS20130
Position (kb)
4349
4350
4351
4352
4353
4354 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4348.606 kb on - strand, within RR42_RS20120 at 4348.737 kb on + strand, within RR42_RS20120 at 4348.737 kb on + strand, within RR42_RS20120 at 4348.738 kb on - strand, within RR42_RS20120 at 4348.738 kb on - strand, within RR42_RS20120 at 4348.785 kb on + strand, within RR42_RS20120 at 4348.785 kb on + strand, within RR42_RS20120 at 4348.786 kb on - strand, within RR42_RS20120 at 4348.917 kb on - strand, within RR42_RS20120 at 4348.917 kb on - strand, within RR42_RS20120 at 4349.008 kb on - strand, within RR42_RS20120 at 4349.160 kb on + strand at 4349.160 kb on + strand at 4349.160 kb on + strand at 4349.160 kb on + strand at 4349.161 kb on - strand at 4349.161 kb on - strand at 4349.161 kb on - strand at 4349.164 kb on + strand at 4349.164 kb on + strand at 4349.164 kb on + strand at 4349.164 kb on + strand at 4349.165 kb on - strand at 4349.165 kb on - strand at 4349.165 kb on - strand at 4349.165 kb on - strand at 4349.165 kb on - strand at 4349.165 kb on - strand at 4349.165 kb on - strand at 4349.165 kb on - strand at 4349.171 kb on + strand at 4349.172 kb on - strand at 4349.172 kb on - strand at 4349.172 kb on - strand at 4349.172 kb on - strand at 4349.172 kb on - strand at 4349.172 kb on - strand at 4349.173 kb on + strand at 4349.174 kb on - strand at 4349.236 kb on - strand at 4349.236 kb on - strand at 4349.382 kb on - strand at 4349.451 kb on + strand at 4349.547 kb on + strand at 4349.547 kb on + strand at 4349.547 kb on + strand at 4349.547 kb on + strand at 4349.548 kb on - strand at 4349.548 kb on - strand at 4349.548 kb on - strand at 4349.548 kb on - strand at 4349.625 kb on + strand at 4349.701 kb on + strand, within RR42_RS20125 at 4349.702 kb on - strand, within RR42_RS20125 at 4349.702 kb on - strand, within RR42_RS20125 at 4349.702 kb on - strand, within RR42_RS20125 at 4349.702 kb on - strand, within RR42_RS20125 at 4349.702 kb on - strand, within RR42_RS20125 at 4349.959 kb on + strand, within RR42_RS20125 at 4349.960 kb on - strand, within RR42_RS20125 at 4349.960 kb on - strand, within RR42_RS20125 at 4349.960 kb on - strand, within RR42_RS20125 at 4349.960 kb on - strand, within RR42_RS20125 at 4350.041 kb on + strand, within RR42_RS20125 at 4350.042 kb on - strand, within RR42_RS20125 at 4350.042 kb on - strand, within RR42_RS20125 at 4350.056 kb on - strand, within RR42_RS20125 at 4350.356 kb on + strand, within RR42_RS20125 at 4351.012 kb on + strand, within RR42_RS20125 at 4351.015 kb on + strand, within RR42_RS20125 at 4351.015 kb on + strand, within RR42_RS20125 at 4351.447 kb on + strand, within RR42_RS20125 at 4351.448 kb on - strand, within RR42_RS20125 at 4351.448 kb on - strand, within RR42_RS20125 at 4351.628 kb on - strand, within RR42_RS20125 at 4351.663 kb on + strand, within RR42_RS20125 at 4351.759 kb on + strand, within RR42_RS20125 at 4351.760 kb on - strand, within RR42_RS20125 at 4351.771 kb on + strand, within RR42_RS20125 at 4351.771 kb on + strand, within RR42_RS20125 at 4351.772 kb on - strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.774 kb on + strand, within RR42_RS20125 at 4351.775 kb on - strand, within RR42_RS20125 at 4351.775 kb on - strand, within RR42_RS20125 at 4351.775 kb on - strand, within RR42_RS20125 at 4351.775 kb on - strand, within RR42_RS20125 at 4351.775 kb on - strand, within RR42_RS20125 at 4351.775 kb on - strand, within RR42_RS20125 at 4351.775 kb on - strand, within RR42_RS20125 at 4351.795 kb on + strand, within RR42_RS20125 at 4351.795 kb on + strand, within RR42_RS20125 at 4351.795 kb on + strand, within RR42_RS20125 at 4351.795 kb on + strand, within RR42_RS20125 at 4351.796 kb on - strand, within RR42_RS20125 at 4351.796 kb on - strand, within RR42_RS20125 at 4351.796 kb on - strand, within RR42_RS20125 at 4351.796 kb on - strand, within RR42_RS20125 at 4351.840 kb on + strand, within RR42_RS20125 at 4351.840 kb on + strand, within RR42_RS20125 at 4351.881 kb on + strand, within RR42_RS20125 at 4351.885 kb on + strand, within RR42_RS20125 at 4351.885 kb on + strand, within RR42_RS20125 at 4351.885 kb on + strand, within RR42_RS20125 at 4351.885 kb on + strand, within RR42_RS20125 at 4351.885 kb on + strand, within RR42_RS20125 at 4351.885 kb on + strand, within RR42_RS20125 at 4351.885 kb on + strand, within RR42_RS20125 at 4351.886 kb on - strand, within RR42_RS20125 at 4351.898 kb on + strand, within RR42_RS20125 at 4351.899 kb on - strand, within RR42_RS20125 at 4351.900 kb on + strand, within RR42_RS20125 at 4351.900 kb on + strand, within RR42_RS20125 at 4351.900 kb on + strand, within RR42_RS20125 at 4351.901 kb on - strand, within RR42_RS20125 at 4351.901 kb on - strand, within RR42_RS20125 at 4351.901 kb on - strand, within RR42_RS20125 at 4351.916 kb on - strand, within RR42_RS20125 at 4351.924 kb on + strand, within RR42_RS20125 at 4352.036 kb on - strand, within RR42_RS20125 at 4352.036 kb on - strand, within RR42_RS20125 at 4352.177 kb on + strand, within RR42_RS20125 at 4352.178 kb on - strand, within RR42_RS20125 at 4352.194 kb on + strand, within RR42_RS20125 at 4352.194 kb on + strand, within RR42_RS20125 at 4352.195 kb on - strand, within RR42_RS20125 at 4352.233 kb on + strand, within RR42_RS20125 at 4352.234 kb on - strand, within RR42_RS20125 at 4352.234 kb on - strand, within RR42_RS20125 at 4352.234 kb on - strand, within RR42_RS20125 at 4352.234 kb on - strand, within RR42_RS20125 at 4352.270 kb on + strand, within RR42_RS20125 at 4352.270 kb on + strand, within RR42_RS20125 at 4352.271 kb on - strand, within RR42_RS20125 at 4352.271 kb on - strand, within RR42_RS20125 at 4352.273 kb on - strand, within RR42_RS20125 at 4352.320 kb on + strand, within RR42_RS20125 at 4352.320 kb on + strand, within RR42_RS20125 at 4352.320 kb on + strand, within RR42_RS20125 at 4352.320 kb on + strand, within RR42_RS20125 at 4352.320 kb on + strand, within RR42_RS20125 at 4352.320 kb on + strand, within RR42_RS20125 at 4352.320 kb on + strand, within RR42_RS20125 at 4352.320 kb on + strand, within RR42_RS20125 at 4352.320 kb on + strand, within RR42_RS20125 at 4352.320 kb on + strand, within RR42_RS20125 at 4352.321 kb on - strand, within RR42_RS20125 at 4352.321 kb on - strand, within RR42_RS20125 at 4352.321 kb on - strand, within RR42_RS20125 at 4352.321 kb on - strand, within RR42_RS20125 at 4352.321 kb on - strand, within RR42_RS20125 at 4352.321 kb on - strand, within RR42_RS20125 at 4352.321 kb on - strand, within RR42_RS20125 at 4352.321 kb on - strand, within RR42_RS20125 at 4352.371 kb on + strand, within RR42_RS20125 at 4352.371 kb on + strand, within RR42_RS20125 at 4352.372 kb on - strand, within RR42_RS20125 at 4352.383 kb on + strand, within RR42_RS20125 at 4352.383 kb on + strand, within RR42_RS20125 at 4352.383 kb on + strand, within RR42_RS20125 at 4352.383 kb on + strand, within RR42_RS20125 at 4352.383 kb on + strand, within RR42_RS20125 at 4352.431 kb on + strand, within RR42_RS20125 at 4352.431 kb on + strand, within RR42_RS20125 at 4352.431 kb on + strand, within RR42_RS20125 at 4352.431 kb on + strand, within RR42_RS20125 at 4352.458 kb on + strand, within RR42_RS20125 at 4352.458 kb on + strand, within RR42_RS20125 at 4352.458 kb on + strand, within RR42_RS20125 at 4352.459 kb on - strand, within RR42_RS20125 at 4352.618 kb on + strand, within RR42_RS20125 at 4352.618 kb on + strand, within RR42_RS20125 at 4352.619 kb on - strand, within RR42_RS20125 at 4352.619 kb on - strand, within RR42_RS20125 at 4353.057 kb on + strand at 4353.175 kb on + strand at 4353.175 kb on + strand at 4353.176 kb on - strand at 4353.310 kb on - strand at 4353.310 kb on - strand at 4353.310 kb on - strand at 4353.365 kb on + strand at 4353.365 kb on + strand at 4353.366 kb on - strand at 4353.392 kb on + strand at 4353.396 kb on + strand at 4353.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 4,348,606 - RR42_RS20120 0.53 +0.4 4,348,737 + RR42_RS20120 0.64 -0.8 4,348,737 + RR42_RS20120 0.64 +0.4 4,348,738 - RR42_RS20120 0.64 -0.2 4,348,738 - RR42_RS20120 0.64 +0.5 4,348,785 + RR42_RS20120 0.69 +0.3 4,348,785 + RR42_RS20120 0.69 -2.2 4,348,786 - RR42_RS20120 0.69 +0.6 4,348,917 - RR42_RS20120 0.80 -1.5 4,348,917 - RR42_RS20120 0.80 +0.3 4,349,008 - RR42_RS20120 0.88 -0.3 4,349,160 + -0.1 4,349,160 + +0.7 4,349,160 + +0.7 4,349,160 + +0.5 4,349,161 - -1.9 4,349,161 - +0.8 4,349,161 - +0.5 4,349,164 + -0.4 4,349,164 + -0.0 4,349,164 + +0.5 4,349,164 + -0.1 4,349,165 - -0.5 4,349,165 - -0.5 4,349,165 - +1.7 4,349,165 - +0.5 4,349,165 - +1.1 4,349,165 - -0.7 4,349,165 - -0.4 4,349,165 - +1.3 4,349,171 + +0.1 4,349,172 - +2.3 4,349,172 - +0.8 4,349,172 - -0.9 4,349,172 - +0.2 4,349,172 - -1.7 4,349,172 - +0.4 4,349,173 + -0.1 4,349,174 - +1.0 4,349,236 - +0.3 4,349,236 - -0.3 4,349,382 - -2.1 4,349,451 + -2.9 4,349,547 + -0.6 4,349,547 + -0.0 4,349,547 + -2.1 4,349,547 + -0.9 4,349,548 - -2.1 4,349,548 - -1.2 4,349,548 - -0.5 4,349,548 - -2.7 4,349,625 + -0.7 4,349,701 + RR42_RS20125 0.10 -2.1 4,349,702 - RR42_RS20125 0.10 -1.5 4,349,702 - RR42_RS20125 0.10 -3.1 4,349,702 - RR42_RS20125 0.10 -0.7 4,349,702 - RR42_RS20125 0.10 -1.9 4,349,702 - RR42_RS20125 0.10 -1.9 4,349,959 + RR42_RS20125 0.17 -1.0 4,349,960 - RR42_RS20125 0.17 -1.4 4,349,960 - RR42_RS20125 0.17 -3.6 4,349,960 - RR42_RS20125 0.17 +0.3 4,349,960 - RR42_RS20125 0.17 -0.5 4,350,041 + RR42_RS20125 0.19 -2.8 4,350,042 - RR42_RS20125 0.19 -1.6 4,350,042 - RR42_RS20125 0.19 -4.3 4,350,056 - RR42_RS20125 0.19 -2.6 4,350,356 + RR42_RS20125 0.27 -1.9 4,351,012 + RR42_RS20125 0.43 -1.7 4,351,015 + RR42_RS20125 0.43 -2.0 4,351,015 + RR42_RS20125 0.43 -1.2 4,351,447 + RR42_RS20125 0.54 -2.7 4,351,448 - RR42_RS20125 0.54 -2.9 4,351,448 - RR42_RS20125 0.54 -2.2 4,351,628 - RR42_RS20125 0.58 -0.9 4,351,663 + RR42_RS20125 0.59 -2.2 4,351,759 + RR42_RS20125 0.62 -0.8 4,351,760 - RR42_RS20125 0.62 -2.6 4,351,771 + RR42_RS20125 0.62 -1.9 4,351,771 + RR42_RS20125 0.62 -2.5 4,351,772 - RR42_RS20125 0.62 -1.1 4,351,774 + RR42_RS20125 0.62 -3.1 4,351,774 + RR42_RS20125 0.62 -2.0 4,351,774 + RR42_RS20125 0.62 -1.4 4,351,774 + RR42_RS20125 0.62 -3.3 4,351,774 + RR42_RS20125 0.62 -1.1 4,351,774 + RR42_RS20125 0.62 -1.3 4,351,774 + RR42_RS20125 0.62 -2.6 4,351,774 + RR42_RS20125 0.62 -2.4 4,351,774 + RR42_RS20125 0.62 -2.3 4,351,774 + RR42_RS20125 0.62 -2.3 4,351,774 + RR42_RS20125 0.62 -2.6 4,351,774 + RR42_RS20125 0.62 -2.4 4,351,774 + RR42_RS20125 0.62 -1.3 4,351,774 + RR42_RS20125 0.62 -0.2 4,351,774 + RR42_RS20125 0.62 -0.3 4,351,775 - RR42_RS20125 0.62 +1.8 4,351,775 - RR42_RS20125 0.62 -3.0 4,351,775 - RR42_RS20125 0.62 -2.2 4,351,775 - RR42_RS20125 0.62 -2.1 4,351,775 - RR42_RS20125 0.62 -1.4 4,351,775 - RR42_RS20125 0.62 -2.1 4,351,775 - RR42_RS20125 0.62 -0.5 4,351,795 + RR42_RS20125 0.63 -0.2 4,351,795 + RR42_RS20125 0.63 -0.1 4,351,795 + RR42_RS20125 0.63 -1.2 4,351,795 + RR42_RS20125 0.63 -2.3 4,351,796 - RR42_RS20125 0.63 -1.7 4,351,796 - RR42_RS20125 0.63 -1.9 4,351,796 - RR42_RS20125 0.63 -4.1 4,351,796 - RR42_RS20125 0.63 -2.9 4,351,840 + RR42_RS20125 0.64 -2.1 4,351,840 + RR42_RS20125 0.64 -1.7 4,351,881 + RR42_RS20125 0.65 -1.1 4,351,885 + RR42_RS20125 0.65 -1.1 4,351,885 + RR42_RS20125 0.65 -1.5 4,351,885 + RR42_RS20125 0.65 -2.2 4,351,885 + RR42_RS20125 0.65 -2.4 4,351,885 + RR42_RS20125 0.65 -2.2 4,351,885 + RR42_RS20125 0.65 +0.8 4,351,885 + RR42_RS20125 0.65 -1.7 4,351,886 - RR42_RS20125 0.65 -1.1 4,351,898 + RR42_RS20125 0.65 -2.1 4,351,899 - RR42_RS20125 0.65 -0.9 4,351,900 + RR42_RS20125 0.65 -0.6 4,351,900 + RR42_RS20125 0.65 -2.8 4,351,900 + RR42_RS20125 0.65 -2.1 4,351,901 - RR42_RS20125 0.65 -1.3 4,351,901 - RR42_RS20125 0.65 -1.1 4,351,901 - RR42_RS20125 0.65 -1.9 4,351,916 - RR42_RS20125 0.66 -2.1 4,351,924 + RR42_RS20125 0.66 +1.3 4,352,036 - RR42_RS20125 0.69 -1.5 4,352,036 - RR42_RS20125 0.69 -0.9 4,352,177 + RR42_RS20125 0.72 -0.9 4,352,178 - RR42_RS20125 0.72 -1.7 4,352,194 + RR42_RS20125 0.73 -1.1 4,352,194 + RR42_RS20125 0.73 -0.5 4,352,195 - RR42_RS20125 0.73 -2.0 4,352,233 + RR42_RS20125 0.73 -2.4 4,352,234 - RR42_RS20125 0.74 -1.7 4,352,234 - RR42_RS20125 0.74 -1.2 4,352,234 - RR42_RS20125 0.74 -1.9 4,352,234 - RR42_RS20125 0.74 -1.6 4,352,270 + RR42_RS20125 0.74 -1.1 4,352,270 + RR42_RS20125 0.74 -1.8 4,352,271 - RR42_RS20125 0.74 -1.5 4,352,271 - RR42_RS20125 0.74 -1.9 4,352,273 - RR42_RS20125 0.74 -2.7 4,352,320 + RR42_RS20125 0.76 +0.3 4,352,320 + RR42_RS20125 0.76 -0.5 4,352,320 + RR42_RS20125 0.76 -2.8 4,352,320 + RR42_RS20125 0.76 -2.1 4,352,320 + RR42_RS20125 0.76 -2.5 4,352,320 + RR42_RS20125 0.76 -2.7 4,352,320 + RR42_RS20125 0.76 -2.4 4,352,320 + RR42_RS20125 0.76 -0.3 4,352,320 + RR42_RS20125 0.76 -1.0 4,352,320 + RR42_RS20125 0.76 -2.5 4,352,321 - RR42_RS20125 0.76 -2.4 4,352,321 - RR42_RS20125 0.76 -1.3 4,352,321 - RR42_RS20125 0.76 -0.9 4,352,321 - RR42_RS20125 0.76 -0.9 4,352,321 - RR42_RS20125 0.76 -2.0 4,352,321 - RR42_RS20125 0.76 -1.9 4,352,321 - RR42_RS20125 0.76 -0.6 4,352,321 - RR42_RS20125 0.76 -2.3 4,352,371 + RR42_RS20125 0.77 -2.3 4,352,371 + RR42_RS20125 0.77 -1.3 4,352,372 - RR42_RS20125 0.77 -1.5 4,352,383 + RR42_RS20125 0.77 -1.6 4,352,383 + RR42_RS20125 0.77 -2.7 4,352,383 + RR42_RS20125 0.77 -1.4 4,352,383 + RR42_RS20125 0.77 -2.4 4,352,383 + RR42_RS20125 0.77 -1.6 4,352,431 + RR42_RS20125 0.78 -0.4 4,352,431 + RR42_RS20125 0.78 -3.5 4,352,431 + RR42_RS20125 0.78 -1.9 4,352,431 + RR42_RS20125 0.78 -1.2 4,352,458 + RR42_RS20125 0.79 -2.2 4,352,458 + RR42_RS20125 0.79 +0.7 4,352,458 + RR42_RS20125 0.79 -4.1 4,352,459 - RR42_RS20125 0.79 -3.3 4,352,618 + RR42_RS20125 0.83 -0.2 4,352,618 + RR42_RS20125 0.83 -1.3 4,352,619 - RR42_RS20125 0.83 -1.7 4,352,619 - RR42_RS20125 0.83 -1.7 4,353,057 + -1.3 4,353,175 + -2.7 4,353,175 + -3.6 4,353,176 - -1.6 4,353,310 - -1.2 4,353,310 - +0.4 4,353,310 - +0.7 4,353,365 + -1.0 4,353,365 + -1.5 4,353,366 - -0.2 4,353,392 + -0.8 4,353,396 + +1.3 4,353,397 - -1.2
Or see this region's nucleotide sequence