Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17720 and RR42_RS17725 are separated by 22 nucleotides RR42_RS17725 and RR42_RS17730 are separated by 507 nucleotides
RR42_RS17720: RR42_RS17720 - sugar kinase, at 3,833,359 to 3,834,306
_RS17720
RR42_RS17725: RR42_RS17725 - membrane protein, at 3,834,329 to 3,834,796
_RS17725
RR42_RS17730: RR42_RS17730 - hypothetical protein, at 3,835,304 to 3,835,885
_RS17730
Position (kb)
3834
3835 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3833.340 kb on + strand at 3833.340 kb on + strand at 3833.341 kb on - strand at 3833.929 kb on + strand, within RR42_RS17720 at 3833.930 kb on - strand, within RR42_RS17720 at 3834.071 kb on - strand, within RR42_RS17720 at 3834.243 kb on + strand at 3834.304 kb on + strand at 3834.328 kb on + strand at 3834.329 kb on - strand at 3834.422 kb on + strand, within RR42_RS17725 at 3834.422 kb on + strand, within RR42_RS17725 at 3834.422 kb on + strand, within RR42_RS17725 at 3834.422 kb on + strand, within RR42_RS17725 at 3834.422 kb on + strand, within RR42_RS17725 at 3834.422 kb on + strand, within RR42_RS17725 at 3834.422 kb on + strand, within RR42_RS17725 at 3834.423 kb on - strand, within RR42_RS17725 at 3834.423 kb on - strand, within RR42_RS17725 at 3834.424 kb on + strand, within RR42_RS17725 at 3834.425 kb on - strand, within RR42_RS17725 at 3834.425 kb on - strand, within RR42_RS17725 at 3834.425 kb on - strand, within RR42_RS17725 at 3834.795 kb on - strand at 3834.918 kb on + strand at 3835.212 kb on + strand at 3835.212 kb on + strand at 3835.598 kb on + strand, within RR42_RS17730 at 3835.598 kb on + strand, within RR42_RS17730 at 3835.646 kb on + strand, within RR42_RS17730
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 3,833,340 + -1.3 3,833,340 + -0.1 3,833,341 - -1.1 3,833,929 + RR42_RS17720 0.60 -1.0 3,833,930 - RR42_RS17720 0.60 -0.5 3,834,071 - RR42_RS17720 0.75 +0.1 3,834,243 + -0.1 3,834,304 + -0.6 3,834,328 + -0.2 3,834,329 - -0.3 3,834,422 + RR42_RS17725 0.20 +0.5 3,834,422 + RR42_RS17725 0.20 -0.5 3,834,422 + RR42_RS17725 0.20 -0.2 3,834,422 + RR42_RS17725 0.20 +0.3 3,834,422 + RR42_RS17725 0.20 -0.4 3,834,422 + RR42_RS17725 0.20 +0.5 3,834,422 + RR42_RS17725 0.20 +0.6 3,834,423 - RR42_RS17725 0.20 +2.7 3,834,423 - RR42_RS17725 0.20 +0.1 3,834,424 + RR42_RS17725 0.20 -1.1 3,834,425 - RR42_RS17725 0.21 +0.3 3,834,425 - RR42_RS17725 0.21 -0.6 3,834,425 - RR42_RS17725 0.21 +0.5 3,834,795 - -1.0 3,834,918 + +0.3 3,835,212 + -0.6 3,835,212 + -0.1 3,835,598 + RR42_RS17730 0.51 -0.4 3,835,598 + RR42_RS17730 0.51 -1.8 3,835,646 + RR42_RS17730 0.59 -0.8
Or see this region's nucleotide sequence