Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17345 and RR42_RS17350 are separated by 34 nucleotides RR42_RS17350 and RR42_RS17355 are separated by 62 nucleotides RR42_RS17355 and RR42_RS17360 are separated by 55 nucleotides
RR42_RS17345: RR42_RS17345 - twitching motility protein PilT, at 3,753,994 to 3,755,133
_RS17345
RR42_RS17350: RR42_RS17350 - twitching motility protein PilT, at 3,755,168 to 3,756,211
_RS17350
RR42_RS17355: RR42_RS17355 - hypothetical protein, at 3,756,274 to 3,757,002
_RS17355
RR42_RS17360: RR42_RS17360 - pyrroline-5-carboxylate reductase, at 3,757,058 to 3,757,882
_RS17360
Position (kb)
3755
3756
3757 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3754.461 kb on - strand, within RR42_RS17345 at 3754.472 kb on + strand, within RR42_RS17345 at 3754.619 kb on + strand, within RR42_RS17345 at 3754.656 kb on - strand, within RR42_RS17345 at 3755.105 kb on + strand at 3755.105 kb on + strand at 3755.106 kb on - strand at 3755.106 kb on - strand at 3755.106 kb on - strand at 3755.218 kb on - strand at 3755.304 kb on + strand, within RR42_RS17350 at 3755.304 kb on + strand, within RR42_RS17350 at 3755.305 kb on - strand, within RR42_RS17350 at 3755.305 kb on - strand, within RR42_RS17350 at 3755.903 kb on + strand, within RR42_RS17350 at 3755.904 kb on - strand, within RR42_RS17350 at 3755.904 kb on - strand, within RR42_RS17350 at 3755.904 kb on - strand, within RR42_RS17350 at 3755.904 kb on - strand, within RR42_RS17350 at 3755.955 kb on + strand, within RR42_RS17350 at 3755.955 kb on + strand, within RR42_RS17350 at 3755.956 kb on - strand, within RR42_RS17350 at 3755.956 kb on - strand, within RR42_RS17350 at 3756.024 kb on + strand, within RR42_RS17350 at 3756.024 kb on + strand, within RR42_RS17350 at 3756.057 kb on + strand, within RR42_RS17350 at 3756.057 kb on + strand, within RR42_RS17350 at 3756.057 kb on + strand, within RR42_RS17350 at 3756.057 kb on + strand, within RR42_RS17350 at 3756.058 kb on - strand, within RR42_RS17350 at 3756.058 kb on - strand, within RR42_RS17350 at 3756.058 kb on - strand, within RR42_RS17350 at 3756.058 kb on - strand, within RR42_RS17350 at 3756.058 kb on - strand, within RR42_RS17350 at 3756.113 kb on - strand at 3756.191 kb on + strand at 3756.191 kb on + strand at 3756.195 kb on - strand at 3756.213 kb on + strand at 3756.213 kb on + strand at 3756.213 kb on + strand at 3756.213 kb on + strand at 3756.214 kb on - strand at 3756.214 kb on - strand at 3756.214 kb on - strand at 3756.214 kb on - strand at 3756.215 kb on + strand at 3756.215 kb on + strand at 3756.238 kb on + strand at 3756.238 kb on + strand at 3756.249 kb on + strand at 3756.259 kb on + strand at 3756.273 kb on + strand at 3756.445 kb on + strand, within RR42_RS17355
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 3,754,461 - RR42_RS17345 0.41 -0.8 3,754,472 + RR42_RS17345 0.42 +0.8 3,754,619 + RR42_RS17345 0.55 -1.0 3,754,656 - RR42_RS17345 0.58 +0.1 3,755,105 + -1.6 3,755,105 + +0.3 3,755,106 - -0.4 3,755,106 - +0.2 3,755,106 - +0.1 3,755,218 - -0.1 3,755,304 + RR42_RS17350 0.13 +0.1 3,755,304 + RR42_RS17350 0.13 +0.3 3,755,305 - RR42_RS17350 0.13 +0.4 3,755,305 - RR42_RS17350 0.13 -0.2 3,755,903 + RR42_RS17350 0.70 +1.1 3,755,904 - RR42_RS17350 0.70 -0.3 3,755,904 - RR42_RS17350 0.70 +1.0 3,755,904 - RR42_RS17350 0.70 -1.2 3,755,904 - RR42_RS17350 0.70 -0.8 3,755,955 + RR42_RS17350 0.75 -1.6 3,755,955 + RR42_RS17350 0.75 -1.1 3,755,956 - RR42_RS17350 0.75 +0.2 3,755,956 - RR42_RS17350 0.75 +0.4 3,756,024 + RR42_RS17350 0.82 -0.5 3,756,024 + RR42_RS17350 0.82 +0.0 3,756,057 + RR42_RS17350 0.85 +0.1 3,756,057 + RR42_RS17350 0.85 -0.2 3,756,057 + RR42_RS17350 0.85 +0.7 3,756,057 + RR42_RS17350 0.85 +0.4 3,756,058 - RR42_RS17350 0.85 +0.1 3,756,058 - RR42_RS17350 0.85 +0.6 3,756,058 - RR42_RS17350 0.85 -0.3 3,756,058 - RR42_RS17350 0.85 +0.5 3,756,058 - RR42_RS17350 0.85 +0.4 3,756,113 - +0.4 3,756,191 + +0.2 3,756,191 + +0.1 3,756,195 - +0.3 3,756,213 + -2.5 3,756,213 + +0.8 3,756,213 + -0.1 3,756,213 + +0.1 3,756,214 - -0.3 3,756,214 - -1.2 3,756,214 - -2.0 3,756,214 - +2.1 3,756,215 + +0.4 3,756,215 + +0.2 3,756,238 + -0.5 3,756,238 + -1.7 3,756,249 + +0.9 3,756,259 + +1.5 3,756,273 + -0.2 3,756,445 + RR42_RS17355 0.23 -2.2
Or see this region's nucleotide sequence