Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17170 and RR42_RS17175 are separated by 189 nucleotides RR42_RS17175 and RR42_RS17180 are separated by 396 nucleotides RR42_RS17180 and RR42_RS17185 are separated by 254 nucleotides
RR42_RS17170: RR42_RS17170 - argininosuccinate synthase, at 3,717,037 to 3,718,266
_RS17170
RR42_RS17175: RR42_RS17175 - ornithine carbamoyltransferase, at 3,718,456 to 3,719,379
_RS17175
RR42_RS17180: RR42_RS17180 - hypothetical protein, at 3,719,776 to 3,720,075
_RS17180
RR42_RS17185: RR42_RS17185 - 30S ribosomal protein S20, at 3,720,330 to 3,720,596
_RS17185
Position (kb)
3718
3719
3720 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3718.288 kb on - strand at 3718.460 kb on + strand at 3719.467 kb on - strand at 3719.476 kb on - strand at 3719.476 kb on - strand at 3719.482 kb on - strand at 3719.482 kb on - strand at 3719.491 kb on - strand at 3719.499 kb on - strand at 3719.499 kb on - strand at 3719.548 kb on - strand at 3719.563 kb on - strand at 3719.563 kb on - strand at 3719.564 kb on + strand at 3719.564 kb on + strand at 3719.565 kb on - strand at 3719.565 kb on - strand at 3719.565 kb on - strand at 3719.602 kb on + strand at 3719.603 kb on - strand at 3719.688 kb on + strand at 3719.761 kb on + strand at 3719.762 kb on - strand at 3719.797 kb on + strand at 3719.797 kb on + strand at 3719.916 kb on + strand, within RR42_RS17180 at 3719.917 kb on - strand, within RR42_RS17180 at 3719.920 kb on + strand, within RR42_RS17180 at 3719.920 kb on + strand, within RR42_RS17180 at 3719.921 kb on - strand, within RR42_RS17180 at 3719.921 kb on - strand, within RR42_RS17180 at 3719.929 kb on + strand, within RR42_RS17180 at 3719.930 kb on - strand, within RR42_RS17180 at 3719.945 kb on + strand, within RR42_RS17180 at 3719.945 kb on + strand, within RR42_RS17180 at 3719.945 kb on + strand, within RR42_RS17180 at 3719.945 kb on + strand, within RR42_RS17180 at 3719.946 kb on - strand, within RR42_RS17180 at 3719.946 kb on - strand, within RR42_RS17180 at 3720.112 kb on - strand at 3720.326 kb on + strand at 3720.326 kb on + strand at 3720.327 kb on - strand at 3720.327 kb on - strand at 3720.327 kb on - strand at 3720.327 kb on - strand at 3720.327 kb on - strand at 3720.327 kb on - strand at 3720.327 kb on - strand at 3720.327 kb on - strand at 3720.327 kb on - strand at 3720.329 kb on - strand at 3720.329 kb on - strand at 3720.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 3,718,288 - +2.4 3,718,460 + -1.0 3,719,467 - +1.5 3,719,476 - -1.0 3,719,476 - +0.5 3,719,482 - -0.5 3,719,482 - +0.4 3,719,491 - +0.2 3,719,499 - +0.7 3,719,499 - +0.1 3,719,548 - -0.8 3,719,563 - -0.3 3,719,563 - -0.1 3,719,564 + +0.5 3,719,564 + -1.4 3,719,565 - +0.3 3,719,565 - -1.4 3,719,565 - -0.7 3,719,602 + -0.2 3,719,603 - +0.7 3,719,688 + -0.3 3,719,761 + +0.1 3,719,762 - +0.1 3,719,797 + +0.5 3,719,797 + +0.7 3,719,916 + RR42_RS17180 0.47 -0.8 3,719,917 - RR42_RS17180 0.47 +0.6 3,719,920 + RR42_RS17180 0.48 +0.9 3,719,920 + RR42_RS17180 0.48 -0.4 3,719,921 - RR42_RS17180 0.48 -0.8 3,719,921 - RR42_RS17180 0.48 +0.1 3,719,929 + RR42_RS17180 0.51 -0.4 3,719,930 - RR42_RS17180 0.51 +0.7 3,719,945 + RR42_RS17180 0.56 -0.1 3,719,945 + RR42_RS17180 0.56 -0.0 3,719,945 + RR42_RS17180 0.56 +1.1 3,719,945 + RR42_RS17180 0.56 +1.1 3,719,946 - RR42_RS17180 0.57 -0.3 3,719,946 - RR42_RS17180 0.57 -1.8 3,720,112 - +0.4 3,720,326 + +1.6 3,720,326 + -1.7 3,720,327 - +0.1 3,720,327 - +0.2 3,720,327 - +0.1 3,720,327 - +0.1 3,720,327 - -1.5 3,720,327 - -0.7 3,720,327 - +0.2 3,720,327 - -1.2 3,720,327 - -0.8 3,720,329 - +0.2 3,720,329 - +0.3 3,720,329 - +0.4
Or see this region's nucleotide sequence