Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17175

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17170 and RR42_RS17175 are separated by 189 nucleotidesRR42_RS17175 and RR42_RS17180 are separated by 396 nucleotidesRR42_RS17180 and RR42_RS17185 are separated by 254 nucleotides RR42_RS17170: RR42_RS17170 - argininosuccinate synthase, at 3,717,037 to 3,718,266 _RS17170 RR42_RS17175: RR42_RS17175 - ornithine carbamoyltransferase, at 3,718,456 to 3,719,379 _RS17175 RR42_RS17180: RR42_RS17180 - hypothetical protein, at 3,719,776 to 3,720,075 _RS17180 RR42_RS17185: RR42_RS17185 - 30S ribosomal protein S20, at 3,720,330 to 3,720,596 _RS17185 Position (kb) 3718 3719 3720Strain fitness (log2 ratio) -2 -1 0 1 2at 3718.288 kb on - strandat 3718.460 kb on + strandat 3719.467 kb on - strandat 3719.476 kb on - strandat 3719.476 kb on - strandat 3719.482 kb on - strandat 3719.482 kb on - strandat 3719.491 kb on - strandat 3719.499 kb on - strandat 3719.499 kb on - strandat 3719.548 kb on - strandat 3719.563 kb on - strandat 3719.563 kb on - strandat 3719.564 kb on + strandat 3719.564 kb on + strandat 3719.565 kb on - strandat 3719.565 kb on - strandat 3719.565 kb on - strandat 3719.602 kb on + strandat 3719.603 kb on - strandat 3719.688 kb on + strandat 3719.761 kb on + strandat 3719.762 kb on - strandat 3719.797 kb on + strandat 3719.797 kb on + strandat 3719.916 kb on + strand, within RR42_RS17180at 3719.917 kb on - strand, within RR42_RS17180at 3719.920 kb on + strand, within RR42_RS17180at 3719.920 kb on + strand, within RR42_RS17180at 3719.921 kb on - strand, within RR42_RS17180at 3719.921 kb on - strand, within RR42_RS17180at 3719.929 kb on + strand, within RR42_RS17180at 3719.930 kb on - strand, within RR42_RS17180at 3719.945 kb on + strand, within RR42_RS17180at 3719.945 kb on + strand, within RR42_RS17180at 3719.945 kb on + strand, within RR42_RS17180at 3719.945 kb on + strand, within RR42_RS17180at 3719.946 kb on - strand, within RR42_RS17180at 3719.946 kb on - strand, within RR42_RS17180at 3720.112 kb on - strandat 3720.326 kb on + strandat 3720.326 kb on + strandat 3720.327 kb on - strandat 3720.327 kb on - strandat 3720.327 kb on - strandat 3720.327 kb on - strandat 3720.327 kb on - strandat 3720.327 kb on - strandat 3720.327 kb on - strandat 3720.327 kb on - strandat 3720.327 kb on - strandat 3720.329 kb on - strandat 3720.329 kb on - strandat 3720.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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3,718,288 - +2.4
3,718,460 + -1.0
3,719,467 - +1.5
3,719,476 - -1.0
3,719,476 - +0.5
3,719,482 - -0.5
3,719,482 - +0.4
3,719,491 - +0.2
3,719,499 - +0.7
3,719,499 - +0.1
3,719,548 - -0.8
3,719,563 - -0.3
3,719,563 - -0.1
3,719,564 + +0.5
3,719,564 + -1.4
3,719,565 - +0.3
3,719,565 - -1.4
3,719,565 - -0.7
3,719,602 + -0.2
3,719,603 - +0.7
3,719,688 + -0.3
3,719,761 + +0.1
3,719,762 - +0.1
3,719,797 + +0.5
3,719,797 + +0.7
3,719,916 + RR42_RS17180 0.47 -0.8
3,719,917 - RR42_RS17180 0.47 +0.6
3,719,920 + RR42_RS17180 0.48 +0.9
3,719,920 + RR42_RS17180 0.48 -0.4
3,719,921 - RR42_RS17180 0.48 -0.8
3,719,921 - RR42_RS17180 0.48 +0.1
3,719,929 + RR42_RS17180 0.51 -0.4
3,719,930 - RR42_RS17180 0.51 +0.7
3,719,945 + RR42_RS17180 0.56 -0.1
3,719,945 + RR42_RS17180 0.56 -0.0
3,719,945 + RR42_RS17180 0.56 +1.1
3,719,945 + RR42_RS17180 0.56 +1.1
3,719,946 - RR42_RS17180 0.57 -0.3
3,719,946 - RR42_RS17180 0.57 -1.8
3,720,112 - +0.4
3,720,326 + +1.6
3,720,326 + -1.7
3,720,327 - +0.1
3,720,327 - +0.2
3,720,327 - +0.1
3,720,327 - +0.1
3,720,327 - -1.5
3,720,327 - -0.7
3,720,327 - +0.2
3,720,327 - -1.2
3,720,327 - -0.8
3,720,329 - +0.2
3,720,329 - +0.3
3,720,329 - +0.4

Or see this region's nucleotide sequence