Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14925 and RR42_RS14930 are separated by 52 nucleotides RR42_RS14930 and RR42_RS14935 are separated by 15 nucleotides RR42_RS14935 and RR42_RS14940 are separated by 67 nucleotides
RR42_RS14925: RR42_RS14925 - hypothetical protein, at 3,227,966 to 3,228,634
_RS14925
RR42_RS14930: RR42_RS14930 - biopolymer transporter ExbD, at 3,228,687 to 3,229,097
_RS14930
RR42_RS14935: RR42_RS14935 - biopolymer transporter ExbB, at 3,229,113 to 3,230,912
_RS14935
RR42_RS14940: RR42_RS14940 - membrane protein, at 3,230,980 to 3,232,566
_RS14940
Position (kb)
3229
3230
3231 Strain fitness (log2 ratio)
-1
0
1
2 at 3228.220 kb on - strand, within RR42_RS14925 at 3228.220 kb on - strand, within RR42_RS14925 at 3228.220 kb on - strand, within RR42_RS14925 at 3228.228 kb on + strand, within RR42_RS14925 at 3228.476 kb on - strand, within RR42_RS14925 at 3228.769 kb on + strand, within RR42_RS14930 at 3228.769 kb on + strand, within RR42_RS14930 at 3228.770 kb on - strand, within RR42_RS14930 at 3229.090 kb on + strand at 3229.090 kb on + strand at 3229.244 kb on - strand at 3229.579 kb on + strand, within RR42_RS14935 at 3229.579 kb on + strand, within RR42_RS14935 at 3230.254 kb on + strand, within RR42_RS14935 at 3230.254 kb on + strand, within RR42_RS14935 at 3230.494 kb on + strand, within RR42_RS14935 at 3230.551 kb on + strand, within RR42_RS14935 at 3230.551 kb on + strand, within RR42_RS14935 at 3230.552 kb on - strand, within RR42_RS14935 at 3230.554 kb on + strand, within RR42_RS14935 at 3230.825 kb on - strand at 3230.930 kb on - strand at 3230.930 kb on - strand at 3230.949 kb on + strand at 3230.949 kb on + strand at 3230.950 kb on - strand at 3230.985 kb on - strand at 3230.985 kb on - strand at 3231.112 kb on + strand at 3231.191 kb on + strand, within RR42_RS14940 at 3231.192 kb on - strand, within RR42_RS14940 at 3231.192 kb on - strand, within RR42_RS14940 at 3231.269 kb on + strand, within RR42_RS14940 at 3231.270 kb on - strand, within RR42_RS14940 at 3231.411 kb on - strand, within RR42_RS14940 at 3231.462 kb on - strand, within RR42_RS14940 at 3231.462 kb on - strand, within RR42_RS14940 at 3231.545 kb on + strand, within RR42_RS14940 at 3231.545 kb on + strand, within RR42_RS14940 at 3231.546 kb on - strand, within RR42_RS14940 at 3231.546 kb on - strand, within RR42_RS14940 at 3231.600 kb on - strand, within RR42_RS14940 at 3231.600 kb on - strand, within RR42_RS14940 at 3231.615 kb on + strand, within RR42_RS14940 at 3231.713 kb on + strand, within RR42_RS14940 at 3231.752 kb on - strand, within RR42_RS14940
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 3,228,220 - RR42_RS14925 0.38 +0.7 3,228,220 - RR42_RS14925 0.38 +1.9 3,228,220 - RR42_RS14925 0.38 +0.1 3,228,228 + RR42_RS14925 0.39 +0.2 3,228,476 - RR42_RS14925 0.76 +0.2 3,228,769 + RR42_RS14930 0.20 -0.0 3,228,769 + RR42_RS14930 0.20 +0.4 3,228,770 - RR42_RS14930 0.20 +1.0 3,229,090 + +0.0 3,229,090 + +0.7 3,229,244 - -0.6 3,229,579 + RR42_RS14935 0.26 +1.2 3,229,579 + RR42_RS14935 0.26 +0.1 3,230,254 + RR42_RS14935 0.63 +0.0 3,230,254 + RR42_RS14935 0.63 -0.3 3,230,494 + RR42_RS14935 0.77 +0.2 3,230,551 + RR42_RS14935 0.80 -0.2 3,230,551 + RR42_RS14935 0.80 -0.7 3,230,552 - RR42_RS14935 0.80 +0.4 3,230,554 + RR42_RS14935 0.80 +1.1 3,230,825 - +0.2 3,230,930 - +1.1 3,230,930 - -0.6 3,230,949 + +0.8 3,230,949 + -0.3 3,230,950 - -0.2 3,230,985 - +1.3 3,230,985 - +0.7 3,231,112 + +1.4 3,231,191 + RR42_RS14940 0.13 -0.1 3,231,192 - RR42_RS14940 0.13 -1.2 3,231,192 - RR42_RS14940 0.13 +0.2 3,231,269 + RR42_RS14940 0.18 +0.6 3,231,270 - RR42_RS14940 0.18 +0.4 3,231,411 - RR42_RS14940 0.27 -0.2 3,231,462 - RR42_RS14940 0.30 -0.4 3,231,462 - RR42_RS14940 0.30 -1.2 3,231,545 + RR42_RS14940 0.36 -0.0 3,231,545 + RR42_RS14940 0.36 +0.6 3,231,546 - RR42_RS14940 0.36 -0.2 3,231,546 - RR42_RS14940 0.36 +1.9 3,231,600 - RR42_RS14940 0.39 -0.7 3,231,600 - RR42_RS14940 0.39 +0.3 3,231,615 + RR42_RS14940 0.40 +0.6 3,231,713 + RR42_RS14940 0.46 +0.3 3,231,752 - RR42_RS14940 0.49 +0.9
Or see this region's nucleotide sequence