Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14920 and RR42_RS14925 are separated by 74 nucleotides RR42_RS14925 and RR42_RS14930 are separated by 52 nucleotides RR42_RS14930 and RR42_RS14935 are separated by 15 nucleotides
RR42_RS14920: RR42_RS14920 - membrane protein, at 3,226,116 to 3,227,891
_RS14920
RR42_RS14925: RR42_RS14925 - hypothetical protein, at 3,227,966 to 3,228,634
_RS14925
RR42_RS14930: RR42_RS14930 - biopolymer transporter ExbD, at 3,228,687 to 3,229,097
_RS14930
RR42_RS14935: RR42_RS14935 - biopolymer transporter ExbB, at 3,229,113 to 3,230,912
_RS14935
Position (kb) 3227
3228
3229 Strain fitness (log2 ratio) -1
0
1
2 at 3227.102 kb on - strand, within RR42_RS14920 at 3227.398 kb on + strand, within RR42_RS14920 at 3227.558 kb on + strand, within RR42_RS14920 at 3227.559 kb on - strand, within RR42_RS14920 at 3227.560 kb on + strand, within RR42_RS14920 at 3227.907 kb on + strand at 3227.907 kb on + strand at 3228.220 kb on - strand, within RR42_RS14925 at 3228.220 kb on - strand, within RR42_RS14925 at 3228.220 kb on - strand, within RR42_RS14925 at 3228.228 kb on + strand, within RR42_RS14925 at 3228.476 kb on - strand, within RR42_RS14925 at 3228.769 kb on + strand, within RR42_RS14930 at 3228.769 kb on + strand, within RR42_RS14930 at 3228.770 kb on - strand, within RR42_RS14930 at 3229.090 kb on + strand at 3229.090 kb on + strand at 3229.244 kb on - strand at 3229.579 kb on + strand, within RR42_RS14935 at 3229.579 kb on + strand, within RR42_RS14935
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 3,227,102 - RR42_RS14920 0.56 +0.0 3,227,398 + RR42_RS14920 0.72 +0.6 3,227,558 + RR42_RS14920 0.81 +0.7 3,227,559 - RR42_RS14920 0.81 +0.1 3,227,560 + RR42_RS14920 0.81 +1.1 3,227,907 + -0.4 3,227,907 + +0.4 3,228,220 - RR42_RS14925 0.38 +0.7 3,228,220 - RR42_RS14925 0.38 +1.9 3,228,220 - RR42_RS14925 0.38 +0.1 3,228,228 + RR42_RS14925 0.39 +0.2 3,228,476 - RR42_RS14925 0.76 +0.2 3,228,769 + RR42_RS14930 0.20 -0.0 3,228,769 + RR42_RS14930 0.20 +0.4 3,228,770 - RR42_RS14930 0.20 +1.0 3,229,090 + +0.0 3,229,090 + +0.7 3,229,244 - -0.6 3,229,579 + RR42_RS14935 0.26 +1.2 3,229,579 + RR42_RS14935 0.26 +0.1
Or see this region's nucleotide sequence