Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14335

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14325 and RR42_RS14330 are separated by 98 nucleotidesRR42_RS14330 and RR42_RS14335 are separated by 87 nucleotidesRR42_RS14335 and RR42_RS14340 are separated by 146 nucleotides RR42_RS14325: RR42_RS14325 - amidophosphoribosyltransferase, at 3,078,860 to 3,080,395 _RS14325 RR42_RS14330: RR42_RS14330 - bacteriocin production protein, at 3,080,494 to 3,080,991 _RS14330 RR42_RS14335: RR42_RS14335 - sporulation protein, at 3,081,079 to 3,081,822 _RS14335 RR42_RS14340: RR42_RS14340 - folylpolyglutamate synthase, at 3,081,969 to 3,083,279 _RS14340 Position (kb) 3081 3082Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3080.461 kb on - strandat 3080.461 kb on - strandat 3080.508 kb on - strandat 3080.996 kb on - strandat 3080.999 kb on - strandat 3080.999 kb on - strandat 3080.999 kb on - strandat 3081.000 kb on - strandat 3081.081 kb on - strandat 3081.081 kb on - strandat 3081.214 kb on - strand, within RR42_RS14335at 3081.216 kb on - strand, within RR42_RS14335at 3081.216 kb on - strand, within RR42_RS14335at 3081.216 kb on - strand, within RR42_RS14335at 3081.216 kb on - strand, within RR42_RS14335at 3081.823 kb on - strandat 3081.823 kb on - strandat 3081.847 kb on - strandat 3081.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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3,080,461 - -0.1
3,080,461 - -0.5
3,080,508 - +0.1
3,080,996 - +0.4
3,080,999 - -1.3
3,080,999 - -1.9
3,080,999 - -0.3
3,081,000 - -2.0
3,081,081 - -0.3
3,081,081 - -1.5
3,081,214 - RR42_RS14335 0.18 -0.2
3,081,216 - RR42_RS14335 0.18 +3.4
3,081,216 - RR42_RS14335 0.18 +0.4
3,081,216 - RR42_RS14335 0.18 +0.8
3,081,216 - RR42_RS14335 0.18 +0.2
3,081,823 - +0.4
3,081,823 - +0.4
3,081,847 - +0.3
3,081,901 - -0.3

Or see this region's nucleotide sequence