Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS13510 and RR42_RS13515 are separated by 65 nucleotides RR42_RS13515 and RR42_RS13520 are separated by 56 nucleotides RR42_RS13520 and RR42_RS13525 are separated by 357 nucleotides RR42_RS13525 and RR42_RS13530 are separated by 75 nucleotides
RR42_RS13510: RR42_RS13510 - carbamoyl phosphate synthase large subunit, at 2,914,406 to 2,917,654
_RS13510
RR42_RS13515: RR42_RS13515 - membrane protein, at 2,917,720 to 2,918,400
_RS13515
RR42_RS13520: RR42_RS13520 - carbamoyl phosphate synthase small subunit, at 2,918,457 to 2,919,593
_RS13520
RR42_RS13525: RR42_RS13525 - endoribonuclease L-PSP, at 2,919,951 to 2,920,361
_RS13525
RR42_RS13530: RR42_RS13530 - 4-hydroxybenzoyl-CoA thioesterase, at 2,920,437 to 2,920,895
_RS13530
Position (kb)
2918
2919
2920 Strain fitness (log2 ratio)
-2
-1
0
1 at 2918.133 kb on - strand, within RR42_RS13515 at 2918.160 kb on - strand, within RR42_RS13515 at 2918.259 kb on - strand, within RR42_RS13515 at 2918.301 kb on - strand, within RR42_RS13515 at 2918.301 kb on - strand, within RR42_RS13515 at 2918.301 kb on - strand, within RR42_RS13515 at 2918.301 kb on - strand, within RR42_RS13515 at 2918.301 kb on - strand, within RR42_RS13515 at 2918.301 kb on - strand, within RR42_RS13515 at 2918.301 kb on - strand, within RR42_RS13515 at 2918.427 kb on - strand at 2918.427 kb on - strand at 2918.459 kb on - strand at 2920.381 kb on - strand at 2920.381 kb on - strand at 2920.381 kb on - strand at 2920.381 kb on - strand at 2920.399 kb on - strand at 2920.558 kb on - strand, within RR42_RS13530
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 2,918,133 - RR42_RS13515 0.61 -0.8 2,918,160 - RR42_RS13515 0.65 +1.5 2,918,259 - RR42_RS13515 0.79 -0.8 2,918,301 - RR42_RS13515 0.85 -0.2 2,918,301 - RR42_RS13515 0.85 -0.9 2,918,301 - RR42_RS13515 0.85 -0.5 2,918,301 - RR42_RS13515 0.85 -0.1 2,918,301 - RR42_RS13515 0.85 +0.4 2,918,301 - RR42_RS13515 0.85 +1.2 2,918,301 - RR42_RS13515 0.85 -0.8 2,918,427 - -1.5 2,918,427 - +0.8 2,918,459 - -0.4 2,920,381 - -1.8 2,920,381 - +0.5 2,920,381 - -1.4 2,920,381 - +0.5 2,920,399 - +0.1 2,920,558 - RR42_RS13530 0.26 -0.1
Or see this region's nucleotide sequence