Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11530

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11525 and RR42_RS11530 are separated by 228 nucleotidesRR42_RS11530 and RR42_RS11535 are separated by 50 nucleotides RR42_RS11525: RR42_RS11525 - hypothetical protein, at 2,464,048 to 2,465,043 _RS11525 RR42_RS11530: RR42_RS11530 - LuxR family transcriptional regulator, at 2,465,272 to 2,465,895 _RS11530 RR42_RS11535: RR42_RS11535 - hypothetical protein, at 2,465,946 to 2,467,307 _RS11535 Position (kb) 2465 2466Strain fitness (log2 ratio) -1 0 1at 2464.733 kb on + strand, within RR42_RS11525at 2464.764 kb on - strand, within RR42_RS11525at 2464.890 kb on + strand, within RR42_RS11525at 2464.890 kb on + strand, within RR42_RS11525at 2465.211 kb on + strandat 2465.212 kb on - strandat 2465.298 kb on - strandat 2465.355 kb on - strand, within RR42_RS11530at 2465.355 kb on - strand, within RR42_RS11530at 2465.878 kb on + strandat 2466.226 kb on + strand, within RR42_RS11535at 2466.227 kb on - strand, within RR42_RS11535at 2466.227 kb on - strand, within RR42_RS11535at 2466.280 kb on + strand, within RR42_RS11535at 2466.280 kb on + strand, within RR42_RS11535at 2466.281 kb on - strand, within RR42_RS11535at 2466.281 kb on - strand, within RR42_RS11535at 2466.499 kb on + strand, within RR42_RS11535at 2466.715 kb on + strand, within RR42_RS11535at 2466.715 kb on + strand, within RR42_RS11535at 2466.715 kb on + strand, within RR42_RS11535at 2466.716 kb on - strand, within RR42_RS11535at 2466.716 kb on - strand, within RR42_RS11535at 2466.716 kb on - strand, within RR42_RS11535at 2466.730 kb on + strand, within RR42_RS11535at 2466.818 kb on - strand, within RR42_RS11535at 2466.818 kb on - strand, within RR42_RS11535

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,464,733 + RR42_RS11525 0.69 -0.5
2,464,764 - RR42_RS11525 0.72 -0.3
2,464,890 + RR42_RS11525 0.85 +0.7
2,464,890 + RR42_RS11525 0.85 -0.4
2,465,211 + +0.1
2,465,212 - -1.0
2,465,298 - -0.2
2,465,355 - RR42_RS11530 0.13 -1.2
2,465,355 - RR42_RS11530 0.13 -0.7
2,465,878 + -0.2
2,466,226 + RR42_RS11535 0.21 -0.2
2,466,227 - RR42_RS11535 0.21 -0.5
2,466,227 - RR42_RS11535 0.21 -0.2
2,466,280 + RR42_RS11535 0.25 +0.6
2,466,280 + RR42_RS11535 0.25 -1.0
2,466,281 - RR42_RS11535 0.25 -1.0
2,466,281 - RR42_RS11535 0.25 -0.4
2,466,499 + RR42_RS11535 0.41 -0.1
2,466,715 + RR42_RS11535 0.56 -0.4
2,466,715 + RR42_RS11535 0.56 -0.2
2,466,715 + RR42_RS11535 0.56 -0.3
2,466,716 - RR42_RS11535 0.57 +0.4
2,466,716 - RR42_RS11535 0.57 -0.1
2,466,716 - RR42_RS11535 0.57 +0.0
2,466,730 + RR42_RS11535 0.58 +0.7
2,466,818 - RR42_RS11535 0.64 +0.1
2,466,818 - RR42_RS11535 0.64 +0.5

Or see this region's nucleotide sequence