Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS10185 and RR42_RS10190 are separated by 278 nucleotides RR42_RS10190 and RR42_RS10195 are separated by 2 nucleotides
RR42_RS10185: RR42_RS10185 - hypothetical protein, at 2,180,296 to 2,181,618
_RS10185
RR42_RS10190: RR42_RS10190 - LuxR family transcriptional regulator, at 2,181,897 to 2,182,541
_RS10190
RR42_RS10195: RR42_RS10195 - hypothetical protein, at 2,182,544 to 2,183,359
_RS10195
Position (kb)
2182
2183
2184 Strain fitness (log2 ratio)
-2
-1
0
1 at 2181.922 kb on + strand at 2181.923 kb on - strand at 2181.983 kb on + strand, within RR42_RS10190 at 2181.983 kb on + strand, within RR42_RS10190 at 2181.984 kb on - strand, within RR42_RS10190 at 2181.987 kb on + strand, within RR42_RS10190 at 2181.988 kb on - strand, within RR42_RS10190 at 2182.149 kb on + strand, within RR42_RS10190 at 2182.165 kb on + strand, within RR42_RS10190 at 2182.166 kb on - strand, within RR42_RS10190 at 2182.166 kb on - strand, within RR42_RS10190 at 2182.166 kb on - strand, within RR42_RS10190 at 2182.166 kb on - strand, within RR42_RS10190 at 2182.213 kb on + strand, within RR42_RS10190 at 2182.235 kb on - strand, within RR42_RS10190 at 2182.359 kb on + strand, within RR42_RS10190 at 2182.556 kb on + strand at 2182.556 kb on + strand at 2182.557 kb on - strand at 2182.557 kb on - strand at 2182.557 kb on - strand at 2182.622 kb on + strand at 2182.631 kb on + strand, within RR42_RS10195 at 2182.632 kb on - strand, within RR42_RS10195 at 2183.343 kb on + strand at 2183.410 kb on + strand at 2183.410 kb on + strand at 2183.500 kb on - strand at 2183.552 kb on - strand at 2183.552 kb on - strand at 2183.552 kb on - strand at 2183.552 kb on - strand at 2183.621 kb on - strand at 2183.627 kb on + strand at 2183.628 kb on - strand at 2183.628 kb on - strand at 2183.628 kb on - strand at 2183.736 kb on + strand at 2183.736 kb on + strand at 2183.736 kb on + strand at 2183.737 kb on - strand at 2183.737 kb on - strand at 2183.960 kb on + strand at 2184.064 kb on + strand at 2184.065 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 2,181,922 + -0.0 2,181,923 - +0.7 2,181,983 + RR42_RS10190 0.13 -0.9 2,181,983 + RR42_RS10190 0.13 -1.1 2,181,984 - RR42_RS10190 0.13 +0.2 2,181,987 + RR42_RS10190 0.14 -0.4 2,181,988 - RR42_RS10190 0.14 +1.3 2,182,149 + RR42_RS10190 0.39 -0.1 2,182,165 + RR42_RS10190 0.42 -1.5 2,182,166 - RR42_RS10190 0.42 -1.8 2,182,166 - RR42_RS10190 0.42 -0.5 2,182,166 - RR42_RS10190 0.42 -0.3 2,182,166 - RR42_RS10190 0.42 +0.5 2,182,213 + RR42_RS10190 0.49 -0.2 2,182,235 - RR42_RS10190 0.52 +0.7 2,182,359 + RR42_RS10190 0.72 -0.2 2,182,556 + +0.6 2,182,556 + +0.3 2,182,557 - +0.3 2,182,557 - +0.9 2,182,557 - -0.1 2,182,622 + +0.8 2,182,631 + RR42_RS10195 0.11 +0.0 2,182,632 - RR42_RS10195 0.11 +1.1 2,183,343 + +1.5 2,183,410 + -0.6 2,183,410 + +1.1 2,183,500 - -0.4 2,183,552 - -0.5 2,183,552 - -1.1 2,183,552 - -0.1 2,183,552 - -0.3 2,183,621 - -0.3 2,183,627 + +1.1 2,183,628 - -0.4 2,183,628 - +0.6 2,183,628 - -0.5 2,183,736 + -0.8 2,183,736 + +1.3 2,183,736 + +0.7 2,183,737 - -0.1 2,183,737 - -0.5 2,183,960 + -0.2 2,184,064 + -0.4 2,184,065 - +0.0
Or see this region's nucleotide sequence