Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05025 and RR42_RS05030 are separated by 326 nucleotides RR42_RS05030 and RR42_RS05035 are separated by 296 nucleotides
RR42_RS05025: RR42_RS05025 - bestrophin, at 1,109,092 to 1,110,045
_RS05025
RR42_RS05030: RR42_RS05030 - hypothetical protein, at 1,110,372 to 1,112,039
_RS05030
RR42_RS05035: RR42_RS05035 - LuxR family transcriptional regulator, at 1,112,336 to 1,112,839
_RS05035
Position (kb)
1110
1111
1112
1113 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1109.376 kb on - strand, within RR42_RS05025 at 1109.642 kb on + strand, within RR42_RS05025 at 1109.648 kb on + strand, within RR42_RS05025 at 1110.366 kb on + strand at 1110.367 kb on - strand at 1110.409 kb on + strand at 1110.409 kb on + strand at 1110.410 kb on - strand at 1110.416 kb on + strand at 1110.453 kb on + strand at 1110.453 kb on + strand at 1110.454 kb on - strand at 1110.633 kb on + strand, within RR42_RS05030 at 1111.669 kb on + strand, within RR42_RS05030 at 1111.669 kb on + strand, within RR42_RS05030 at 1111.670 kb on - strand, within RR42_RS05030 at 1111.670 kb on - strand, within RR42_RS05030 at 1111.673 kb on + strand, within RR42_RS05030 at 1111.979 kb on + strand at 1111.979 kb on + strand at 1111.980 kb on - strand at 1112.710 kb on + strand, within RR42_RS05035 at 1112.710 kb on + strand, within RR42_RS05035 at 1112.710 kb on + strand, within RR42_RS05035 at 1112.710 kb on + strand, within RR42_RS05035 at 1112.710 kb on + strand, within RR42_RS05035 at 1112.710 kb on + strand, within RR42_RS05035 at 1112.710 kb on + strand, within RR42_RS05035 at 1112.710 kb on + strand, within RR42_RS05035 at 1112.711 kb on - strand, within RR42_RS05035 at 1112.711 kb on - strand, within RR42_RS05035 at 1112.711 kb on - strand, within RR42_RS05035 at 1112.711 kb on - strand, within RR42_RS05035 at 1112.711 kb on - strand, within RR42_RS05035 at 1112.882 kb on - strand at 1112.882 kb on - strand at 1113.009 kb on + strand at 1113.010 kb on - strand at 1113.037 kb on + strand at 1113.037 kb on + strand at 1113.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 1,109,376 - RR42_RS05025 0.30 -1.2 1,109,642 + RR42_RS05025 0.58 +1.1 1,109,648 + RR42_RS05025 0.58 -0.0 1,110,366 + +0.4 1,110,367 - -1.1 1,110,409 + -0.2 1,110,409 + +0.6 1,110,410 - -0.5 1,110,416 + -0.7 1,110,453 + -1.5 1,110,453 + +0.1 1,110,454 - +0.7 1,110,633 + RR42_RS05030 0.16 +0.4 1,111,669 + RR42_RS05030 0.78 +0.6 1,111,669 + RR42_RS05030 0.78 -1.1 1,111,670 - RR42_RS05030 0.78 +0.2 1,111,670 - RR42_RS05030 0.78 +1.2 1,111,673 + RR42_RS05030 0.78 +1.0 1,111,979 + -3.4 1,111,979 + -1.4 1,111,980 - -0.0 1,112,710 + RR42_RS05035 0.74 +0.0 1,112,710 + RR42_RS05035 0.74 -0.6 1,112,710 + RR42_RS05035 0.74 +0.6 1,112,710 + RR42_RS05035 0.74 +0.1 1,112,710 + RR42_RS05035 0.74 +0.1 1,112,710 + RR42_RS05035 0.74 -0.1 1,112,710 + RR42_RS05035 0.74 -0.3 1,112,710 + RR42_RS05035 0.74 -0.9 1,112,711 - RR42_RS05035 0.74 -0.8 1,112,711 - RR42_RS05035 0.74 +0.2 1,112,711 - RR42_RS05035 0.74 +0.3 1,112,711 - RR42_RS05035 0.74 -0.3 1,112,711 - RR42_RS05035 0.74 +1.1 1,112,882 - -0.6 1,112,882 - -0.2 1,113,009 + +1.5 1,113,010 - +1.3 1,113,037 + +0.5 1,113,037 + -0.4 1,113,038 - +0.6
Or see this region's nucleotide sequence