Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23665 and HSERO_RS23670 are separated by 258 nucleotides HSERO_RS23670 and HSERO_RS23675 are separated by 2 nucleotides
HSERO_RS23665: HSERO_RS23665 - phosphonate ABC transporter substrate-binding protein, at 5,424,219 to 5,425,208
_RS23665
HSERO_RS23670: HSERO_RS23670 - chemotaxis protein CheY, at 5,425,467 to 5,426,153
_RS23670
HSERO_RS23675: HSERO_RS23675 - histidine kinase, at 5,426,156 to 5,427,559
_RS23675
Position (kb) 5425
5426
5427 Strain fitness (log2 ratio) -1
0
1
2 at 5424.578 kb on + strand, within HSERO_RS23665 at 5424.585 kb on - strand, within HSERO_RS23665 at 5424.586 kb on - strand, within HSERO_RS23665 at 5424.586 kb on - strand, within HSERO_RS23665 at 5424.747 kb on - strand, within HSERO_RS23665 at 5424.763 kb on - strand, within HSERO_RS23665 at 5424.775 kb on - strand, within HSERO_RS23665 at 5425.090 kb on - strand, within HSERO_RS23665 at 5425.199 kb on - strand at 5425.258 kb on + strand at 5425.573 kb on - strand, within HSERO_RS23670 at 5425.654 kb on - strand, within HSERO_RS23670 at 5425.927 kb on + strand, within HSERO_RS23670 at 5426.055 kb on - strand, within HSERO_RS23670 at 5426.186 kb on + strand at 5426.296 kb on - strand at 5426.296 kb on - strand at 5426.379 kb on - strand, within HSERO_RS23675 at 5426.644 kb on + strand at 5426.792 kb on + strand, within HSERO_RS23675 at 5427.019 kb on + strand, within HSERO_RS23675 at 5427.070 kb on + strand, within HSERO_RS23675 at 5427.078 kb on - strand, within HSERO_RS23675
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 5,424,578 + HSERO_RS23665 0.36 -0.2 5,424,585 - HSERO_RS23665 0.37 -0.9 5,424,586 - HSERO_RS23665 0.37 -0.3 5,424,586 - HSERO_RS23665 0.37 -1.0 5,424,747 - HSERO_RS23665 0.53 +0.1 5,424,763 - HSERO_RS23665 0.55 +0.3 5,424,775 - HSERO_RS23665 0.56 -0.7 5,425,090 - HSERO_RS23665 0.88 -0.1 5,425,199 - +0.1 5,425,258 + +0.1 5,425,573 - HSERO_RS23670 0.15 -1.3 5,425,654 - HSERO_RS23670 0.27 -0.6 5,425,927 + HSERO_RS23670 0.67 -1.0 5,426,055 - HSERO_RS23670 0.86 -0.4 5,426,186 + +0.1 5,426,296 - -0.1 5,426,296 - +0.7 5,426,379 - HSERO_RS23675 0.16 -0.1 5,426,644 + +2.5 5,426,792 + HSERO_RS23675 0.45 -0.5 5,427,019 + HSERO_RS23675 0.61 +0.0 5,427,070 + HSERO_RS23675 0.65 -0.4 5,427,078 - HSERO_RS23675 0.66 +0.8
Or see this region's nucleotide sequence