Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS17890 and HSERO_RS17895 are separated by 117 nucleotides HSERO_RS17895 and HSERO_RS17900 are separated by 57 nucleotides HSERO_RS17900 and HSERO_RS17905 are separated by 75 nucleotides
HSERO_RS17890: HSERO_RS17890 - transcription antitermination protein NusB, at 4,113,484 to 4,113,954
_RS17890
HSERO_RS17895: HSERO_RS17895 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,114,072 to 4,114,557
_RS17895
HSERO_RS17900: HSERO_RS17900 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 4,114,615 to 4,115,736
_RS17900
HSERO_RS17905: HSERO_RS17905 - tRNA-dihydrouridine synthase A, at 4,115,812 to 4,116,858
_RS17905
Position (kb) 4114
4115
4116 Strain fitness (log2 ratio) -1
0
1 at 4114.560 kb on - strand at 4114.900 kb on + strand, within HSERO_RS17900 at 4114.906 kb on - strand, within HSERO_RS17900 at 4115.328 kb on - strand, within HSERO_RS17900 at 4115.822 kb on + strand at 4115.868 kb on + strand at 4116.039 kb on - strand, within HSERO_RS17905 at 4116.087 kb on - strand, within HSERO_RS17905 at 4116.119 kb on + strand, within HSERO_RS17905 at 4116.127 kb on - strand, within HSERO_RS17905 at 4116.264 kb on - strand, within HSERO_RS17905 at 4116.397 kb on + strand, within HSERO_RS17905 at 4116.398 kb on + strand, within HSERO_RS17905 at 4116.450 kb on + strand, within HSERO_RS17905 at 4116.472 kb on - strand, within HSERO_RS17905 at 4116.553 kb on + strand, within HSERO_RS17905 at 4116.599 kb on - strand, within HSERO_RS17905 at 4116.660 kb on - strand, within HSERO_RS17905 at 4116.686 kb on + strand, within HSERO_RS17905
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 4,114,560 - -0.1 4,114,900 + HSERO_RS17900 0.25 -1.2 4,114,906 - HSERO_RS17900 0.26 -0.4 4,115,328 - HSERO_RS17900 0.64 -0.9 4,115,822 + +0.6 4,115,868 + +1.0 4,116,039 - HSERO_RS17905 0.22 -0.3 4,116,087 - HSERO_RS17905 0.26 -0.6 4,116,119 + HSERO_RS17905 0.29 -0.4 4,116,127 - HSERO_RS17905 0.30 +0.0 4,116,264 - HSERO_RS17905 0.43 +0.3 4,116,397 + HSERO_RS17905 0.56 -0.2 4,116,398 + HSERO_RS17905 0.56 -0.4 4,116,450 + HSERO_RS17905 0.61 +0.1 4,116,472 - HSERO_RS17905 0.63 +0.2 4,116,553 + HSERO_RS17905 0.71 -0.5 4,116,599 - HSERO_RS17905 0.75 -0.2 4,116,660 - HSERO_RS17905 0.81 -0.2 4,116,686 + HSERO_RS17905 0.83 +0.5
Or see this region's nucleotide sequence