Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17810

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS17805 and HSERO_RS17810 overlap by 1 nucleotidesHSERO_RS17810 and HSERO_RS17815 are separated by 36 nucleotides HSERO_RS17805: HSERO_RS17805 - glycosyl transferase, at 4,090,524 to 4,091,627 _RS17805 HSERO_RS17810: HSERO_RS17810 - glycosyl transferase, at 4,091,627 to 4,092,613 _RS17810 HSERO_RS17815: HSERO_RS17815 - glycosyl transferase, at 4,092,650 to 4,093,648 _RS17815 Position (kb) 4091 4092 4093Strain fitness (log2 ratio) -3 -2 -1 0 1at 4091.876 kb on + strand, within HSERO_RS17810at 4093.377 kb on + strand, within HSERO_RS17815at 4093.485 kb on - strand, within HSERO_RS17815at 4093.510 kb on - strand, within HSERO_RS17815

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,091,876 + HSERO_RS17810 0.25 -0.6
4,093,377 + HSERO_RS17815 0.73 -1.8
4,093,485 - HSERO_RS17815 0.84 -3.0
4,093,510 - HSERO_RS17815 0.86 -0.2

Or see this region's nucleotide sequence