Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16450

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS16445 and HSERO_RS16450 are separated by 83 nucleotidesHSERO_RS16450 and HSERO_RS16455 are separated by 34 nucleotides HSERO_RS16445: HSERO_RS16445 - amidophosphoribosyltransferase, at 3,763,748 to 3,765,268 _RS16445 HSERO_RS16450: HSERO_RS16450 - colicin V production protein, at 3,765,352 to 3,765,852 _RS16450 HSERO_RS16455: HSERO_RS16455 - hypothetical protein, at 3,765,887 to 3,766,870 _RS16455 Position (kb) 3765 3766Strain fitness (log2 ratio) -3 -2 -1 0 1at 3765.496 kb on - strand, within HSERO_RS16450at 3765.581 kb on + strand, within HSERO_RS16450at 3765.589 kb on - strand, within HSERO_RS16450

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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3,765,496 - HSERO_RS16450 0.29 -0.0
3,765,581 + HSERO_RS16450 0.46 -3.0
3,765,589 - HSERO_RS16450 0.47 -0.9

Or see this region's nucleotide sequence