Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04330 and HSERO_RS04335 are separated by 358 nucleotides HSERO_RS04335 and HSERO_RS04340 overlap by 4 nucleotides
HSERO_RS04330: HSERO_RS04330 - ATP-dependent exonuclease, at 953,938 to 957,435
_RS04330
HSERO_RS04335: HSERO_RS04335 - sodium:proton antiporter, at 957,794 to 959,002
_RS04335
HSERO_RS04340: HSERO_RS04340 - gamma-glutamyl ligase, at 958,999 to 960,228
_RS04340
Position (kb) 957
958
959
960 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 957.054 kb on - strand, within HSERO_RS04330 at 957.095 kb on + strand at 957.198 kb on - strand at 957.252 kb on - strand at 957.252 kb on - strand at 957.252 kb on - strand at 957.276 kb on + strand at 957.304 kb on - strand at 957.339 kb on + strand at 957.345 kb on - strand at 957.347 kb on - strand at 957.419 kb on + strand at 957.429 kb on + strand at 957.429 kb on + strand at 957.448 kb on - strand at 957.454 kb on + strand at 957.462 kb on - strand at 957.462 kb on - strand at 957.469 kb on - strand at 957.530 kb on + strand at 957.603 kb on - strand at 957.618 kb on - strand at 957.674 kb on + strand at 957.732 kb on + strand at 957.740 kb on - strand at 957.740 kb on - strand at 957.753 kb on - strand at 957.769 kb on + strand at 957.789 kb on + strand at 957.789 kb on + strand at 957.791 kb on + strand at 957.932 kb on + strand, within HSERO_RS04335 at 958.202 kb on - strand, within HSERO_RS04335 at 958.322 kb on + strand, within HSERO_RS04335 at 958.395 kb on + strand, within HSERO_RS04335 at 958.995 kb on - strand at 959.039 kb on + strand at 959.071 kb on - strand at 959.078 kb on - strand at 959.083 kb on - strand at 959.100 kb on + strand at 959.282 kb on + strand, within HSERO_RS04340 at 959.379 kb on - strand, within HSERO_RS04340 at 959.462 kb on + strand, within HSERO_RS04340 at 959.548 kb on + strand, within HSERO_RS04340 at 959.604 kb on - strand, within HSERO_RS04340 at 959.704 kb on + strand, within HSERO_RS04340 at 959.921 kb on - strand, within HSERO_RS04340 at 959.942 kb on + strand, within HSERO_RS04340
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 957,054 - HSERO_RS04330 0.89 +1.1 957,095 + -0.4 957,198 - -0.3 957,252 - -0.4 957,252 - -1.6 957,252 - -0.1 957,276 + -1.4 957,304 - +0.5 957,339 + +0.1 957,345 - -0.5 957,347 - +0.4 957,419 + -0.6 957,429 + -0.2 957,429 + -0.3 957,448 - +0.4 957,454 + +0.3 957,462 - +0.6 957,462 - -0.1 957,469 - +0.3 957,530 + +0.3 957,603 - -0.3 957,618 - +0.5 957,674 + +0.2 957,732 + -0.6 957,740 - -2.5 957,740 - -1.1 957,753 - -2.4 957,769 + -0.5 957,789 + -1.3 957,789 + -3.8 957,791 + -2.1 957,932 + HSERO_RS04335 0.11 -3.3 958,202 - HSERO_RS04335 0.34 -3.6 958,322 + HSERO_RS04335 0.44 -3.7 958,395 + HSERO_RS04335 0.50 -1.6 958,995 - -1.7 959,039 + -4.5 959,071 - -1.5 959,078 - +0.4 959,083 - -4.4 959,100 + -4.3 959,282 + HSERO_RS04340 0.23 -5.0 959,379 - HSERO_RS04340 0.31 -4.2 959,462 + HSERO_RS04340 0.38 -6.1 959,548 + HSERO_RS04340 0.45 -1.2 959,604 - HSERO_RS04340 0.49 -5.6 959,704 + HSERO_RS04340 0.57 -4.8 959,921 - HSERO_RS04340 0.75 -2.4 959,942 + HSERO_RS04340 0.77 -4.6
Or see this region's nucleotide sequence