Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04265 and HSERO_RS04270 are separated by 78 nucleotides HSERO_RS04270 and HSERO_RS04275 are separated by 31 nucleotides HSERO_RS04275 and HSERO_RS04280 are separated by 95 nucleotides
HSERO_RS04265: HSERO_RS04265 - tyrosine recombinase XerD, at 936,894 to 937,817
_RS04265
HSERO_RS04270: HSERO_RS04270 - membrane protein, at 937,896 to 938,396
_RS04270
HSERO_RS04275: HSERO_RS04275 - glycerol-3-phosphate acyltransferase, at 938,428 to 939,045
_RS04275
HSERO_RS04280: HSERO_RS04280 - tRNA threonylcarbamoyladenosine modification protein TsaD, at 939,141 to 940,205
_RS04280
Position (kb) 937
938
939 Strain fitness (log2 ratio) -2
-1
0
1 at 937.055 kb on + strand, within HSERO_RS04265 at 937.847 kb on + strand at 937.851 kb on + strand at 937.851 kb on + strand at 937.936 kb on + strand at 937.965 kb on - strand, within HSERO_RS04270 at 938.029 kb on + strand, within HSERO_RS04270 at 938.257 kb on - strand, within HSERO_RS04270 at 938.390 kb on + strand at 938.390 kb on + strand at 938.395 kb on + strand at 939.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 937,055 + HSERO_RS04265 0.17 -1.0 937,847 + -0.4 937,851 + +0.4 937,851 + +0.1 937,936 + -0.1 937,965 - HSERO_RS04270 0.14 -1.8 938,029 + HSERO_RS04270 0.27 -0.4 938,257 - HSERO_RS04270 0.72 -0.8 938,390 + +0.1 938,390 + -0.2 938,395 + +0.3 939,174 + +0.0
Or see this region's nucleotide sequence