Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03060

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03055 and HSERO_RS03060 are separated by 95 nucleotidesHSERO_RS03060 and HSERO_RS03065 are separated by 44 nucleotides HSERO_RS03055: HSERO_RS03055 - inorganic polyphosphate/ATP-NAD kinase, at 667,267 to 668,184 _RS03055 HSERO_RS03060: HSERO_RS03060 - DNA repair protein, at 668,280 to 669,926 _RS03060 HSERO_RS03065: HSERO_RS03065 - ferrochelatase, at 669,971 to 671,080 _RS03065 Position (kb) 668 669 670Strain fitness (log2 ratio) -2 -1 0 1at 668.393 kb on + strandat 668.492 kb on + strand, within HSERO_RS03060at 668.595 kb on + strand, within HSERO_RS03060at 668.945 kb on + strand, within HSERO_RS03060at 669.059 kb on + strand, within HSERO_RS03060at 669.172 kb on + strand, within HSERO_RS03060at 669.553 kb on - strand, within HSERO_RS03060

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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668,393 + -0.1
668,492 + HSERO_RS03060 0.13 -0.8
668,595 + HSERO_RS03060 0.19 -0.8
668,945 + HSERO_RS03060 0.40 -0.6
669,059 + HSERO_RS03060 0.47 +0.1
669,172 + HSERO_RS03060 0.54 -1.8
669,553 - HSERO_RS03060 0.77 -2.3

Or see this region's nucleotide sequence