Experiment: PYE with sodium fluoride 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02739 and CCNA_02740 overlap by 4 nucleotides CCNA_02740 and CCNA_02741 are separated by 211 nucleotides CCNA_02741 and CCNA_02742 are separated by 180 nucleotides
CCNA_02739: CCNA_02739 - transposase, at 2,899,970 to 2,900,950
_02739
CCNA_02740: CCNA_02740 - transposase, at 2,900,947 to 2,901,381
_02740
CCNA_02741: CCNA_02741 - hypothetical protein, at 2,901,593 to 2,902,285
_02741
CCNA_02742: CCNA_02742 - hypothetical protein, at 2,902,466 to 2,903,737
_02742
Position (kb)
2901
2902
2903 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2901.362 kb on + strand at 2901.375 kb on + strand at 2901.375 kb on + strand at 2901.448 kb on - strand at 2901.451 kb on - strand at 2901.501 kb on + strand at 2901.541 kb on + strand at 2901.541 kb on + strand at 2901.541 kb on + strand at 2901.549 kb on - strand at 2901.549 kb on - strand at 2901.582 kb on + strand at 2901.582 kb on + strand at 2901.590 kb on - strand at 2901.591 kb on - strand at 2901.599 kb on + strand at 2901.667 kb on + strand, within CCNA_02741 at 2901.667 kb on + strand, within CCNA_02741 at 2901.675 kb on - strand, within CCNA_02741 at 2901.696 kb on + strand, within CCNA_02741 at 2901.761 kb on + strand, within CCNA_02741 at 2901.764 kb on - strand, within CCNA_02741 at 2901.769 kb on - strand, within CCNA_02741 at 2901.774 kb on - strand, within CCNA_02741 at 2901.790 kb on + strand, within CCNA_02741 at 2901.790 kb on + strand, within CCNA_02741 at 2901.798 kb on + strand, within CCNA_02741 at 2901.798 kb on - strand, within CCNA_02741 at 2901.798 kb on - strand, within CCNA_02741 at 2901.855 kb on + strand, within CCNA_02741 at 2901.882 kb on + strand, within CCNA_02741 at 2901.901 kb on + strand, within CCNA_02741 at 2901.909 kb on - strand, within CCNA_02741 at 2901.926 kb on + strand, within CCNA_02741 at 2901.926 kb on + strand, within CCNA_02741 at 2901.981 kb on + strand, within CCNA_02741 at 2901.981 kb on + strand, within CCNA_02741 at 2901.981 kb on + strand, within CCNA_02741 at 2902.020 kb on - strand, within CCNA_02741 at 2902.028 kb on - strand, within CCNA_02741 at 2902.144 kb on + strand, within CCNA_02741 at 2902.168 kb on + strand, within CCNA_02741 at 2902.168 kb on + strand, within CCNA_02741 at 2902.168 kb on + strand, within CCNA_02741 at 2902.215 kb on + strand, within CCNA_02741 at 2902.241 kb on + strand at 2902.241 kb on + strand at 2902.241 kb on + strand at 2902.241 kb on + strand at 2902.241 kb on + strand at 2902.249 kb on - strand at 2902.249 kb on - strand at 2902.384 kb on - strand at 2902.413 kb on + strand at 2902.421 kb on - strand at 2902.524 kb on - strand at 2902.540 kb on + strand at 2902.548 kb on - strand at 2902.552 kb on + strand at 2902.560 kb on - strand at 2902.564 kb on + strand at 2902.629 kb on - strand, within CCNA_02742 at 2902.631 kb on - strand, within CCNA_02742 at 2902.640 kb on - strand, within CCNA_02742 at 2902.642 kb on + strand, within CCNA_02742 at 2902.650 kb on - strand, within CCNA_02742 at 2902.650 kb on - strand, within CCNA_02742 at 2902.660 kb on - strand, within CCNA_02742 at 2902.705 kb on + strand, within CCNA_02742 at 2902.710 kb on + strand at 2902.712 kb on + strand, within CCNA_02742 at 2902.713 kb on - strand, within CCNA_02742 at 2902.713 kb on - strand, within CCNA_02742 at 2902.717 kb on + strand, within CCNA_02742 at 2902.717 kb on + strand, within CCNA_02742 at 2902.722 kb on + strand, within CCNA_02742 at 2902.725 kb on - strand, within CCNA_02742 at 2902.725 kb on - strand, within CCNA_02742 at 2902.725 kb on - strand, within CCNA_02742 at 2902.731 kb on + strand, within CCNA_02742 at 2902.739 kb on - strand, within CCNA_02742 at 2902.739 kb on - strand, within CCNA_02742 at 2902.761 kb on + strand, within CCNA_02742 at 2902.769 kb on - strand, within CCNA_02742 at 2902.769 kb on - strand, within CCNA_02742 at 2902.769 kb on - strand, within CCNA_02742 at 2902.774 kb on + strand, within CCNA_02742 at 2902.782 kb on - strand, within CCNA_02742 at 2902.793 kb on - strand, within CCNA_02742 at 2902.833 kb on - strand, within CCNA_02742 at 2902.856 kb on - strand, within CCNA_02742 at 2902.861 kb on + strand, within CCNA_02742 at 2902.868 kb on + strand, within CCNA_02742 at 2902.869 kb on + strand, within CCNA_02742 at 2902.869 kb on - strand, within CCNA_02742 at 2902.873 kb on + strand, within CCNA_02742 at 2902.882 kb on - strand, within CCNA_02742 at 2902.888 kb on - strand, within CCNA_02742 at 2902.969 kb on - strand, within CCNA_02742 at 2903.026 kb on + strand, within CCNA_02742 at 2903.064 kb on + strand, within CCNA_02742 at 2903.064 kb on + strand, within CCNA_02742 at 2903.064 kb on + strand, within CCNA_02742 at 2903.072 kb on - strand, within CCNA_02742 at 2903.072 kb on - strand, within CCNA_02742 at 2903.115 kb on - strand, within CCNA_02742 at 2903.120 kb on + strand, within CCNA_02742 at 2903.172 kb on - strand, within CCNA_02742 at 2903.210 kb on + strand, within CCNA_02742 at 2903.263 kb on + strand, within CCNA_02742 at 2903.270 kb on + strand, within CCNA_02742 at 2903.275 kb on + strand, within CCNA_02742 at 2903.280 kb on + strand, within CCNA_02742
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with sodium fluoride 15 mM remove 2,901,362 + -0.4 2,901,375 + +2.1 2,901,375 + -3.1 2,901,448 - +2.0 2,901,451 - +1.1 2,901,501 + +0.3 2,901,541 + +0.9 2,901,541 + +1.7 2,901,541 + -0.2 2,901,549 - -0.4 2,901,549 - -1.0 2,901,582 + +0.1 2,901,582 + -1.3 2,901,590 - -0.4 2,901,591 - +0.2 2,901,599 + -0.0 2,901,667 + CCNA_02741 0.11 -2.6 2,901,667 + CCNA_02741 0.11 -1.8 2,901,675 - CCNA_02741 0.12 +1.9 2,901,696 + CCNA_02741 0.15 -0.7 2,901,761 + CCNA_02741 0.24 +2.6 2,901,764 - CCNA_02741 0.25 -1.1 2,901,769 - CCNA_02741 0.25 +1.0 2,901,774 - CCNA_02741 0.26 +4.7 2,901,790 + CCNA_02741 0.28 +1.4 2,901,790 + CCNA_02741 0.28 +0.8 2,901,798 + CCNA_02741 0.30 +2.1 2,901,798 - CCNA_02741 0.30 +0.4 2,901,798 - CCNA_02741 0.30 -1.9 2,901,855 + CCNA_02741 0.38 -0.6 2,901,882 + CCNA_02741 0.42 +1.2 2,901,901 + CCNA_02741 0.44 -0.9 2,901,909 - CCNA_02741 0.46 +0.2 2,901,926 + CCNA_02741 0.48 -2.0 2,901,926 + CCNA_02741 0.48 -0.3 2,901,981 + CCNA_02741 0.56 -1.6 2,901,981 + CCNA_02741 0.56 -1.8 2,901,981 + CCNA_02741 0.56 -0.0 2,902,020 - CCNA_02741 0.62 +1.0 2,902,028 - CCNA_02741 0.63 -2.3 2,902,144 + CCNA_02741 0.80 -1.1 2,902,168 + CCNA_02741 0.83 +1.5 2,902,168 + CCNA_02741 0.83 +1.1 2,902,168 + CCNA_02741 0.83 -0.8 2,902,215 + CCNA_02741 0.90 +0.9 2,902,241 + -0.4 2,902,241 + +0.9 2,902,241 + +2.0 2,902,241 + +0.9 2,902,241 + +0.7 2,902,249 - -0.7 2,902,249 - -0.2 2,902,384 - +1.6 2,902,413 + +0.5 2,902,421 - +0.1 2,902,524 - -0.2 2,902,540 + -1.4 2,902,548 - +0.7 2,902,552 + -1.6 2,902,560 - +0.1 2,902,564 + +1.2 2,902,629 - CCNA_02742 0.13 +0.4 2,902,631 - CCNA_02742 0.13 +0.6 2,902,640 - CCNA_02742 0.14 +0.8 2,902,642 + CCNA_02742 0.14 +1.7 2,902,650 - CCNA_02742 0.14 -0.1 2,902,650 - CCNA_02742 0.14 +0.6 2,902,660 - CCNA_02742 0.15 -0.1 2,902,705 + CCNA_02742 0.19 -2.0 2,902,710 + +0.8 2,902,712 + CCNA_02742 0.19 +1.8 2,902,713 - CCNA_02742 0.19 -0.2 2,902,713 - CCNA_02742 0.19 +0.1 2,902,717 + CCNA_02742 0.20 +1.5 2,902,717 + CCNA_02742 0.20 -0.4 2,902,722 + CCNA_02742 0.20 -0.5 2,902,725 - CCNA_02742 0.20 +0.1 2,902,725 - CCNA_02742 0.20 -0.8 2,902,725 - CCNA_02742 0.20 +1.2 2,902,731 + CCNA_02742 0.21 -0.3 2,902,739 - CCNA_02742 0.21 +0.4 2,902,739 - CCNA_02742 0.21 +1.4 2,902,761 + CCNA_02742 0.23 -1.3 2,902,769 - CCNA_02742 0.24 +0.2 2,902,769 - CCNA_02742 0.24 -0.7 2,902,769 - CCNA_02742 0.24 +1.6 2,902,774 + CCNA_02742 0.24 -0.2 2,902,782 - CCNA_02742 0.25 +2.0 2,902,793 - CCNA_02742 0.26 -1.5 2,902,833 - CCNA_02742 0.29 +1.3 2,902,856 - CCNA_02742 0.31 +0.0 2,902,861 + CCNA_02742 0.31 -1.8 2,902,868 + CCNA_02742 0.32 +1.8 2,902,869 + CCNA_02742 0.32 -1.5 2,902,869 - CCNA_02742 0.32 +0.7 2,902,873 + CCNA_02742 0.32 -0.1 2,902,882 - CCNA_02742 0.33 +0.9 2,902,888 - CCNA_02742 0.33 +0.8 2,902,969 - CCNA_02742 0.40 -1.7 2,903,026 + CCNA_02742 0.44 -0.6 2,903,064 + CCNA_02742 0.47 -1.8 2,903,064 + CCNA_02742 0.47 +0.0 2,903,064 + CCNA_02742 0.47 -1.9 2,903,072 - CCNA_02742 0.48 -0.2 2,903,072 - CCNA_02742 0.48 +0.5 2,903,115 - CCNA_02742 0.51 +1.5 2,903,120 + CCNA_02742 0.51 -0.1 2,903,172 - CCNA_02742 0.56 -0.5 2,903,210 + CCNA_02742 0.58 -0.8 2,903,263 + CCNA_02742 0.63 -1.4 2,903,270 + CCNA_02742 0.63 +0.3 2,903,275 + CCNA_02742 0.64 -0.2 2,903,280 + CCNA_02742 0.64 -0.7
Or see this region's nucleotide sequence