Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01189

Experiment: PYE with sodium fluoride 15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with sodium fluoride 15 mM
1,305,773	+				+0.4
1,305,799	+				-0.1
1,305,856	+		CCNA_01188	0.13	+0.3
1,305,857	+		CCNA_01188	0.13	-0.1
1,305,876	+		CCNA_01188	0.15	+0.8
1,305,969	+		CCNA_01188	0.25	+0.8
1,305,971	+		CCNA_01188	0.25	+0.0
1,305,971	+		CCNA_01188	0.25	+1.4
1,305,971	+		CCNA_01188	0.25	+0.2
1,305,971	+		CCNA_01188	0.25	-0.1
1,305,971	+		CCNA_01188	0.25	-1.0
1,306,018	+		CCNA_01188	0.30	+0.3
1,306,018	+		CCNA_01188	0.30	+0.5
1,306,018	+		CCNA_01188	0.30	-0.5
1,306,018	+		CCNA_01188	0.30	+0.7
1,306,018	+		CCNA_01188	0.30	+0.4
1,306,018	+		CCNA_01188	0.30	+0.8
1,306,018	+		CCNA_01188	0.30	+0.0
1,306,018	+		CCNA_01188	0.30	-0.6
1,306,018	+		CCNA_01188	0.30	-0.9
1,306,018	+		CCNA_01188	0.30	-1.3
1,306,018	+		CCNA_01188	0.30	+1.0
1,306,026	-		CCNA_01188	0.31	+0.3
1,306,026	-		CCNA_01188	0.31	+0.6
1,306,026	-		CCNA_01188	0.31	+0.9
1,306,026	-		CCNA_01188	0.31	+0.5
1,306,026	-		CCNA_01188	0.31	-0.2
1,306,033	+		CCNA_01188	0.32	-0.1
1,306,036	-		CCNA_01188	0.32	-1.8
1,306,036	-		CCNA_01188	0.32	-1.0
1,306,038	+		CCNA_01188	0.33	-1.4
1,306,040	-		CCNA_01188	0.33	+0.7
1,306,042	+		CCNA_01188	0.33	+0.9
1,306,042	+		CCNA_01188	0.33	-1.4
1,306,089	+		CCNA_01188	0.38	+0.2
1,306,096	+		CCNA_01188	0.39	-0.5
1,306,104	-		CCNA_01188	0.40	-1.3
1,306,105	+		CCNA_01188	0.40	+0.5
1,306,109	-		CCNA_01188	0.40	-0.9
1,306,170	-		CCNA_01188	0.47	-0.7
1,306,170	-		CCNA_01188	0.47	-2.5
1,306,199	-		CCNA_01188	0.50	-1.4
1,306,215	+		CCNA_01188	0.52	+1.0
1,306,215	+		CCNA_01188	0.52	+1.0
1,306,215	+		CCNA_01188	0.52	+1.0
1,306,223	-		CCNA_01188	0.53	-0.5
1,306,317	+		CCNA_01188	0.63	-0.1
1,306,317	+		CCNA_01188	0.63	-1.0
1,306,339	-		CCNA_01188	0.65	+0.0
1,306,434	+		CCNA_01188	0.75	-1.2
1,306,447	+		CCNA_01188	0.77	+0.1
1,306,461	+		CCNA_01188	0.78	+0.9
1,306,466	+		CCNA_01188	0.79	+0.4
1,306,466	+		CCNA_01188	0.79	-2.8
1,306,469	-		CCNA_01188	0.79	-1.5
1,306,540	-		CCNA_01188	0.87	-1.4
1,306,633	+				-0.0
1,306,641	+				+0.3
1,306,691	+				+1.0
1,306,699	-				+0.2
1,306,714	+				+0.9
1,306,722	-				-1.1
1,306,801	-				-1.0
1,306,830	+				-0.8
1,306,865	-				-1.0
1,306,900	+				+1.3
1,306,903	-				-1.5
1,306,903	-				-0.3
1,306,903	-				-2.1
1,306,925	+				-1.0
1,306,925	-				+0.4
1,306,931	-				-1.6
1,306,951	+				-2.5
1,306,959	-				-2.1
1,306,959	-				-0.8
1,306,959	-				-2.5
1,306,968	+				-1.2
1,306,987	+				-0.4
1,306,995	-				-1.9
1,306,995	-				+0.5
1,307,040	-				+0.3
1,307,127	-		CCNA_01189	0.12	-2.2
1,307,149	+		CCNA_01189	0.13	+0.3
1,307,157	-		CCNA_01189	0.13	+0.3
1,307,179	+		CCNA_01189	0.14	-0.7
1,307,203	+		CCNA_01189	0.15	-2.2
1,307,230	+		CCNA_01189	0.16	-1.3
1,307,300	+		CCNA_01189	0.18	+0.6
1,307,357	+		CCNA_01189	0.20	-2.0
1,307,365	-		CCNA_01189	0.21	-0.9
1,307,554	+		CCNA_01189	0.27	-1.0
1,307,562	-		CCNA_01189	0.27	-0.7
1,307,562	-		CCNA_01189	0.27	-0.7
1,307,562	-		CCNA_01189	0.27	-0.1
1,307,691	+		CCNA_01189	0.32	+0.2
1,307,703	+		CCNA_01189	0.32	-1.3
1,307,711	-		CCNA_01189	0.33	-1.0
1,307,735	-		CCNA_01189	0.33	-0.9
1,307,750	-		CCNA_01189	0.34	+0.7
1,307,752	+		CCNA_01189	0.34	-2.7
1,307,771	+		CCNA_01189	0.35	-0.3
1,307,779	-		CCNA_01189	0.35	+0.7
1,307,806	-		CCNA_01189	0.36	-1.3
1,307,806	-		CCNA_01189	0.36	-1.8
1,307,826	+		CCNA_01189	0.37	-1.0
1,307,832	+		CCNA_01189	0.37	-2.3
1,307,840	-		CCNA_01189	0.37	-0.9
1,307,840	-		CCNA_01189	0.37	+0.1
1,307,881	+		CCNA_01189	0.38	-2.6
1,307,881	+		CCNA_01189	0.38	+0.3
1,307,903	+		CCNA_01189	0.39	-2.2
1,307,903	+		CCNA_01189	0.39	-0.7
1,307,903	+		CCNA_01189	0.39	-0.9
1,307,911	-		CCNA_01189	0.39	-0.1
1,307,911	-		CCNA_01189	0.39	-3.0
1,307,911	-		CCNA_01189	0.39	-0.4
1,307,911	-		CCNA_01189	0.39	-0.0
1,307,911	-		CCNA_01189	0.39	-1.1
1,307,983	+		CCNA_01189	0.42	-1.5
1,307,983	+		CCNA_01189	0.42	-2.0
1,307,991	-		CCNA_01189	0.42	-0.4
1,308,030	-		CCNA_01189	0.44	-1.6
1,308,053	-		CCNA_01189	0.44	-1.7
1,308,120	-		CCNA_01189	0.47	-2.8
1,308,162	-		CCNA_01189	0.48	-1.5
1,308,173	+		CCNA_01189	0.49	-1.3
1,308,181	-		CCNA_01189	0.49	-1.0
1,308,184	+		CCNA_01189	0.49	-1.7
1,308,187	-		CCNA_01189	0.49	-2.0
1,308,195	+		CCNA_01189	0.49	+0.5
1,308,205	+		CCNA_01189	0.50	-1.9
1,308,213	-		CCNA_01189	0.50	+0.5
1,308,265	+		CCNA_01189	0.52	-3.1
1,308,332	-		CCNA_01189	0.54	+0.0
1,308,379	+		CCNA_01189	0.56	-1.7
1,308,428	+		CCNA_01189	0.57	-0.1
1,308,428	+		CCNA_01189	0.57	-1.2
1,308,435	+		CCNA_01189	0.58	-0.1
1,308,435	+		CCNA_01189	0.58	-1.4
1,308,436	-		CCNA_01189	0.58	-1.4
1,308,436	-		CCNA_01189	0.58	-2.2
1,308,436	-		CCNA_01189	0.58	-1.1
1,308,438	-		CCNA_01189	0.58	-0.7
1,308,491	+		CCNA_01189	0.59	-0.1
1,308,499	-		CCNA_01189	0.60	-1.2
1,308,499	-		CCNA_01189	0.60	-0.8
1,308,504	+		CCNA_01189	0.60	+1.1
1,308,526	+		CCNA_01189	0.61	-0.4
1,308,549	+		CCNA_01189	0.61	-1.0
1,308,585	-		CCNA_01189	0.63	-0.7
1,308,598	-		CCNA_01189	0.63	-1.9
1,308,631	-		CCNA_01189	0.64	-1.0
1,308,633	-		CCNA_01189	0.64	-0.1
1,308,646	+		CCNA_01189	0.65	+1.1
1,308,676	+		CCNA_01189	0.66	-0.1
1,308,692	-		CCNA_01189	0.66	-0.3
1,308,712	+		CCNA_01189	0.67	-2.0
1,308,714	+		CCNA_01189	0.67	-0.8
1,308,714	+		CCNA_01189	0.67	-2.2
1,308,722	-		CCNA_01189	0.67	+0.2
1,308,722	-		CCNA_01189	0.67	+0.1
1,308,727	-		CCNA_01189	0.68	-2.9
1,308,728	+		CCNA_01189	0.68	-2.3
1,308,743	+		CCNA_01189	0.68	+0.3
1,308,792	-		CCNA_01189	0.70	+0.2
1,308,836	+		CCNA_01189	0.71	+0.2
1,308,836	+		CCNA_01189	0.71	+1.8
1,308,854	-		CCNA_01189	0.72	-1.0
1,308,854	-		CCNA_01189	0.72	+1.0
1,308,856	+		CCNA_01189	0.72	-1.6
1,308,864	-		CCNA_01189	0.72	-2.3
1,308,909	+		CCNA_01189	0.74	+0.0
1,308,909	+		CCNA_01189	0.74	+0.3
1,308,940	+		CCNA_01189	0.75	-3.0
1,308,974	+		CCNA_01189	0.76	-1.3
1,309,028	-		CCNA_01189	0.78	+0.2
1,309,038	-		CCNA_01189	0.78	-0.1
1,309,054	+		CCNA_01189	0.79	-0.3
1,309,064	+		CCNA_01189	0.79	-1.3
1,309,064	+		CCNA_01189	0.79	-1.1
1,309,064	+		CCNA_01189	0.79	+1.5
1,309,072	-		CCNA_01189	0.79	-2.0
1,309,077	-		CCNA_01189	0.80	+0.9
1,309,129	-		CCNA_01189	0.81	-0.3
1,309,163	-		CCNA_01189	0.83	-2.9
1,309,169	+		CCNA_01189	0.83	+0.2
1,309,181	+		CCNA_01189	0.83	+1.2
1,309,189	-		CCNA_01189	0.84	+0.7
1,309,216	+		CCNA_01189	0.84	+1.0
1,309,249	+		CCNA_01189	0.86	-2.8
1,309,277	+		CCNA_01189	0.87	-1.7
1,309,295	+		CCNA_01189	0.87	+1.3
1,309,295	+		CCNA_01189	0.87	+0.1
1,309,309	-		CCNA_01189	0.88	-1.2
1,309,351	+		CCNA_01189	0.89	+0.1
1,309,369	-		CCNA_01189	0.90	-1.5
1,309,386	-				-1.0
1,309,394	+				+0.7
1,309,399	+				-0.2
1,309,421	+				+0.4
1,309,421	+				-0.3
1,309,429	-				-1.2
1,309,429	-				-1.8
1,309,429	-				-0.9
1,309,429	-				-0.8
1,309,429	-				-2.3
1,309,429	-				+0.3
1,309,468	+				-1.1
1,309,468	+				+0.9
1,309,486	-				-3.0
1,309,488	-				-2.5
1,309,534	-				-0.8
1,309,567	+				-1.2
1,309,622	+				+0.7
1,309,622	-				-0.1
1,309,660	+				+0.4
1,309,668	-				-1.5
1,309,668	-				+0.7
1,309,689	-				-2.1
1,309,695	-				-2.6
1,309,710	-				-0.3
1,309,743	-				-0.9
1,309,759	-				-0.0
1,309,759	-				-1.8
1,309,788	-				-2.9
1,309,822	+				-0.3
1,309,867	+				-0.5
1,309,886	+				+0.0
1,309,886	+				-1.0
1,309,886	+				+1.1
1,309,894	-				+0.9
1,309,894	-				-1.1
1,309,952	-		CCNA_01190	0.12	-0.4
1,309,952	-		CCNA_01190	0.12	-2.3
1,309,967	+		CCNA_01190	0.13	+0.1
1,309,967	+		CCNA_01190	0.13	-0.5
1,309,983	+		CCNA_01190	0.14	-1.3
1,310,016	-		CCNA_01190	0.16	-1.5
1,310,037	-		CCNA_01190	0.17	-0.3
1,310,095	+		CCNA_01190	0.21	+1.0
1,310,124	+		CCNA_01190	0.23	+1.0
1,310,124	+		CCNA_01190	0.23	-0.0
1,310,132	-		CCNA_01190	0.24	+0.3
1,310,133	+		CCNA_01190	0.24	+1.4
1,310,141	-		CCNA_01190	0.24	+1.9
1,310,160	+		CCNA_01190	0.25	-0.7
1,310,168	-		CCNA_01190	0.26	-0.1
1,310,206	+		CCNA_01190	0.28	+1.2
1,310,206	+		CCNA_01190	0.28	+1.0
1,310,206	+		CCNA_01190	0.28	-0.1
1,310,206	+		CCNA_01190	0.28	-0.9
1,310,214	-		CCNA_01190	0.29	-0.4
1,310,214	-		CCNA_01190	0.29	+1.4
1,310,214	-		CCNA_01190	0.29	-0.2
1,310,214	-		CCNA_01190	0.29	+1.4
1,310,219	+		CCNA_01190	0.29	+0.2
1,310,224	+		CCNA_01190	0.30	-0.8
1,310,227	-		CCNA_01190	0.30	+0.0
1,310,227	-		CCNA_01190	0.30	-0.3
1,310,268	+		CCNA_01190	0.32	+0.0
1,310,268	+		CCNA_01190	0.32	-0.3
1,310,432	-		CCNA_01190	0.43	+0.7
1,310,465	+		CCNA_01190	0.45	-0.1
1,310,472	-		CCNA_01190	0.46	-2.4
1,310,499	-		CCNA_01190	0.48	-0.7
1,310,562	-		CCNA_01190	0.52	-0.9
1,310,633	-		CCNA_01190	0.56	-0.5
1,310,633	-				+0.5
1,310,633	-		CCNA_01190	0.56	+1.5