Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23370

Experiment: soil sample 3; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS23365 and ABZR87_RS23370 overlap by 4 nucleotidesABZR87_RS23370 and ABZR87_RS23375 overlap by 20 nucleotides ABZR87_RS23365: ABZR87_RS23365 - hybrid sensor histidine kinase/response regulator, at 1,607,969 to 1,610,299 _RS23365 ABZR87_RS23370: ABZR87_RS23370 - chemotaxis protein CheW, at 1,610,296 to 1,610,997 _RS23370 ABZR87_RS23375: ABZR87_RS23375 - CheR family methyltransferase, at 1,610,978 to 1,612,432 _RS23375 Position (kb) 1610 1611Strain fitness (log2 ratio) -1 0 1at 1609.344 kb on + strand, within ABZR87_RS23365at 1609.398 kb on + strand, within ABZR87_RS23365at 1609.399 kb on - strand, within ABZR87_RS23365at 1609.399 kb on - strand, within ABZR87_RS23365at 1609.399 kb on - strand, within ABZR87_RS23365at 1609.454 kb on - strand, within ABZR87_RS23365at 1609.563 kb on + strand, within ABZR87_RS23365at 1609.564 kb on - strand, within ABZR87_RS23365at 1609.885 kb on + strand, within ABZR87_RS23365at 1609.885 kb on + strand, within ABZR87_RS23365at 1610.027 kb on - strand, within ABZR87_RS23365at 1610.540 kb on + strand, within ABZR87_RS23370at 1610.540 kb on + strand, within ABZR87_RS23370at 1610.541 kb on - strand, within ABZR87_RS23370at 1610.637 kb on + strand, within ABZR87_RS23370at 1610.638 kb on - strand, within ABZR87_RS23370at 1610.891 kb on + strand, within ABZR87_RS23370at 1611.156 kb on + strand, within ABZR87_RS23375at 1611.174 kb on + strand, within ABZR87_RS23375at 1611.175 kb on - strand, within ABZR87_RS23375at 1611.246 kb on + strand, within ABZR87_RS23375at 1611.246 kb on + strand, within ABZR87_RS23375at 1611.247 kb on - strand, within ABZR87_RS23375at 1611.247 kb on - strand, within ABZR87_RS23375at 1611.253 kb on + strand, within ABZR87_RS23375at 1611.253 kb on + strand, within ABZR87_RS23375at 1611.254 kb on - strand, within ABZR87_RS23375at 1611.254 kb on - strand, within ABZR87_RS23375at 1611.254 kb on - strand, within ABZR87_RS23375at 1611.398 kb on + strand, within ABZR87_RS23375at 1611.454 kb on + strand, within ABZR87_RS23375at 1611.689 kb on + strand, within ABZR87_RS23375at 1611.689 kb on + strand, within ABZR87_RS23375at 1611.689 kb on + strand, within ABZR87_RS23375at 1611.690 kb on - strand, within ABZR87_RS23375at 1611.766 kb on - strand, within ABZR87_RS23375at 1611.766 kb on - strand, within ABZR87_RS23375at 1611.766 kb on - strand, within ABZR87_RS23375at 1611.766 kb on - strand, within ABZR87_RS23375at 1611.766 kb on - strand, within ABZR87_RS23375at 1611.798 kb on + strand, within ABZR87_RS23375at 1611.865 kb on + strand, within ABZR87_RS23375at 1611.865 kb on + strand, within ABZR87_RS23375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 3; outgrowth in LB
remove
1,609,344 + ABZR87_RS23365 0.59 +0.2
1,609,398 + ABZR87_RS23365 0.61 +1.4
1,609,399 - ABZR87_RS23365 0.61 -0.3
1,609,399 - ABZR87_RS23365 0.61 +0.6
1,609,399 - ABZR87_RS23365 0.61 -0.6
1,609,454 - ABZR87_RS23365 0.64 +0.2
1,609,563 + ABZR87_RS23365 0.68 +0.6
1,609,564 - ABZR87_RS23365 0.68 +0.4
1,609,885 + ABZR87_RS23365 0.82 +0.7
1,609,885 + ABZR87_RS23365 0.82 -0.1
1,610,027 - ABZR87_RS23365 0.88 -0.2
1,610,540 + ABZR87_RS23370 0.35 -0.8
1,610,540 + ABZR87_RS23370 0.35 +0.1
1,610,541 - ABZR87_RS23370 0.35 +0.4
1,610,637 + ABZR87_RS23370 0.49 +0.6
1,610,638 - ABZR87_RS23370 0.49 +0.6
1,610,891 + ABZR87_RS23370 0.85 +0.4
1,611,156 + ABZR87_RS23375 0.12 +0.9
1,611,174 + ABZR87_RS23375 0.13 -0.4
1,611,175 - ABZR87_RS23375 0.14 +0.3
1,611,246 + ABZR87_RS23375 0.18 +1.4
1,611,246 + ABZR87_RS23375 0.18 -0.0
1,611,247 - ABZR87_RS23375 0.18 +0.8
1,611,247 - ABZR87_RS23375 0.18 +0.1
1,611,253 + ABZR87_RS23375 0.19 +0.7
1,611,253 + ABZR87_RS23375 0.19 +0.1
1,611,254 - ABZR87_RS23375 0.19 +0.8
1,611,254 - ABZR87_RS23375 0.19 +0.3
1,611,254 - ABZR87_RS23375 0.19 +0.0
1,611,398 + ABZR87_RS23375 0.29 +0.1
1,611,454 + ABZR87_RS23375 0.33 -0.1
1,611,689 + ABZR87_RS23375 0.49 +0.6
1,611,689 + ABZR87_RS23375 0.49 -0.9
1,611,689 + ABZR87_RS23375 0.49 -0.8
1,611,690 - ABZR87_RS23375 0.49 +1.1
1,611,766 - ABZR87_RS23375 0.54 +0.9
1,611,766 - ABZR87_RS23375 0.54 +1.1
1,611,766 - ABZR87_RS23375 0.54 -0.4
1,611,766 - ABZR87_RS23375 0.54 -0.1
1,611,766 - ABZR87_RS23375 0.54 -0.2
1,611,798 + ABZR87_RS23375 0.56 +0.2
1,611,865 + ABZR87_RS23375 0.61 +0.6
1,611,865 + ABZR87_RS23375 0.61 -1.2

Or see this region's nucleotide sequence