Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22040

Experiment: soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22030 and ABZR87_RS22035 are separated by 122 nucleotidesABZR87_RS22035 and ABZR87_RS22040 are separated by 181 nucleotidesABZR87_RS22040 and ABZR87_RS22045 are separated by 297 nucleotides ABZR87_RS22030: ABZR87_RS22030 - hypothetical protein, at 1,312,719 to 1,313,162 _RS22030 ABZR87_RS22035: ABZR87_RS22035 - hypothetical protein, at 1,313,285 to 1,313,581 _RS22035 ABZR87_RS22040: ABZR87_RS22040 - S24 family peptidase, at 1,313,763 to 1,314,548 _RS22040 ABZR87_RS22045: ABZR87_RS22045 - GNAT family N-acetyltransferase, at 1,314,846 to 1,315,394 _RS22045 Position (kb) 1313 1314 1315Strain fitness (log2 ratio) -2 -1 0 1at 1312.885 kb on + strand, within ABZR87_RS22030at 1312.885 kb on + strand, within ABZR87_RS22030at 1312.886 kb on - strand, within ABZR87_RS22030at 1312.886 kb on - strand, within ABZR87_RS22030at 1312.936 kb on + strand, within ABZR87_RS22030at 1312.937 kb on - strand, within ABZR87_RS22030at 1312.937 kb on - strand, within ABZR87_RS22030at 1312.942 kb on + strand, within ABZR87_RS22030at 1312.942 kb on + strand, within ABZR87_RS22030at 1312.943 kb on - strand, within ABZR87_RS22030at 1313.177 kb on + strandat 1313.177 kb on + strandat 1313.177 kb on + strandat 1313.177 kb on + strandat 1313.178 kb on - strandat 1313.286 kb on + strandat 1313.286 kb on + strandat 1313.287 kb on - strandat 1313.493 kb on + strand, within ABZR87_RS22035at 1313.493 kb on + strand, within ABZR87_RS22035at 1313.494 kb on - strand, within ABZR87_RS22035at 1313.494 kb on - strand, within ABZR87_RS22035at 1313.542 kb on + strand, within ABZR87_RS22035at 1313.542 kb on + strand, within ABZR87_RS22035at 1313.543 kb on - strand, within ABZR87_RS22035at 1313.654 kb on + strandat 1313.654 kb on + strandat 1314.698 kb on - strandat 1314.718 kb on - strandat 1314.896 kb on - strandat 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.085 kb on - strand, within ABZR87_RS22045at 1315.085 kb on - strand, within ABZR87_RS22045at 1315.085 kb on - strand, within ABZR87_RS22045at 1315.085 kb on - strand, within ABZR87_RS22045at 1315.112 kb on - strand, within ABZR87_RS22045at 1315.112 kb on - strand, within ABZR87_RS22045at 1315.141 kb on + strand, within ABZR87_RS22045at 1315.141 kb on + strand, within ABZR87_RS22045at 1315.142 kb on - strand, within ABZR87_RS22045at 1315.142 kb on - strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.271 kb on + strand, within ABZR87_RS22045at 1315.271 kb on + strand, within ABZR87_RS22045at 1315.272 kb on - strand, within ABZR87_RS22045at 1315.288 kb on + strand, within ABZR87_RS22045at 1315.288 kb on + strand, within ABZR87_RS22045at 1315.289 kb on - strand, within ABZR87_RS22045at 1315.292 kb on + strand, within ABZR87_RS22045at 1315.293 kb on - strand, within ABZR87_RS22045at 1315.293 kb on - strand, within ABZR87_RS22045at 1315.301 kb on + strand, within ABZR87_RS22045at 1315.370 kb on + strandat 1315.509 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 3; outgrowth in LB
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1,312,885 + ABZR87_RS22030 0.37 +0.0
1,312,885 + ABZR87_RS22030 0.37 +0.1
1,312,886 - ABZR87_RS22030 0.38 -0.2
1,312,886 - ABZR87_RS22030 0.38 -0.8
1,312,936 + ABZR87_RS22030 0.49 -1.4
1,312,937 - ABZR87_RS22030 0.49 +0.4
1,312,937 - ABZR87_RS22030 0.49 -0.2
1,312,942 + ABZR87_RS22030 0.50 -0.1
1,312,942 + ABZR87_RS22030 0.50 -0.7
1,312,943 - ABZR87_RS22030 0.50 -0.2
1,313,177 + -0.8
1,313,177 + -0.2
1,313,177 + -0.2
1,313,177 + -0.1
1,313,178 - +0.2
1,313,286 + +0.2
1,313,286 + +0.8
1,313,287 - -2.1
1,313,493 + ABZR87_RS22035 0.70 +0.0
1,313,493 + ABZR87_RS22035 0.70 +0.8
1,313,494 - ABZR87_RS22035 0.70 -2.6
1,313,494 - ABZR87_RS22035 0.70 -2.4
1,313,542 + ABZR87_RS22035 0.87 -0.0
1,313,542 + ABZR87_RS22035 0.87 -0.5
1,313,543 - ABZR87_RS22035 0.87 -2.0
1,313,654 + +0.6
1,313,654 + -2.5
1,314,698 - +0.8
1,314,718 - +0.4
1,314,896 - -0.4
1,315,084 + ABZR87_RS22045 0.43 -0.3
1,315,084 + ABZR87_RS22045 0.43 +0.3
1,315,084 + ABZR87_RS22045 0.43 -1.0
1,315,084 + ABZR87_RS22045 0.43 +0.3
1,315,084 + ABZR87_RS22045 0.43 -2.5
1,315,084 + ABZR87_RS22045 0.43 -0.9
1,315,084 + ABZR87_RS22045 0.43 -0.8
1,315,085 - ABZR87_RS22045 0.44 +0.2
1,315,085 - ABZR87_RS22045 0.44 -0.4
1,315,085 - ABZR87_RS22045 0.44 -1.1
1,315,085 - ABZR87_RS22045 0.44 -0.4
1,315,112 - ABZR87_RS22045 0.48 -0.7
1,315,112 - ABZR87_RS22045 0.48 -0.7
1,315,141 + ABZR87_RS22045 0.54 -0.8
1,315,141 + ABZR87_RS22045 0.54 -2.1
1,315,142 - ABZR87_RS22045 0.54 -0.4
1,315,142 - ABZR87_RS22045 0.54 -0.1
1,315,183 + ABZR87_RS22045 0.61 +0.0
1,315,183 + ABZR87_RS22045 0.61 -0.0
1,315,183 + ABZR87_RS22045 0.61 +0.8
1,315,183 + ABZR87_RS22045 0.61 +0.0
1,315,183 + ABZR87_RS22045 0.61 -0.3
1,315,183 + ABZR87_RS22045 0.61 -0.6
1,315,183 + ABZR87_RS22045 0.61 -0.3
1,315,183 + ABZR87_RS22045 0.61 +0.5
1,315,183 + ABZR87_RS22045 0.61 +0.3
1,315,184 - ABZR87_RS22045 0.62 +0.7
1,315,184 - ABZR87_RS22045 0.62 +0.1
1,315,184 - ABZR87_RS22045 0.62 -0.5
1,315,184 - ABZR87_RS22045 0.62 -0.9
1,315,184 - ABZR87_RS22045 0.62 -0.4
1,315,184 - ABZR87_RS22045 0.62 -0.8
1,315,184 - ABZR87_RS22045 0.62 +0.7
1,315,184 - ABZR87_RS22045 0.62 -2.2
1,315,184 - ABZR87_RS22045 0.62 -0.0
1,315,271 + ABZR87_RS22045 0.77 +1.1
1,315,271 + ABZR87_RS22045 0.77 -0.9
1,315,272 - ABZR87_RS22045 0.78 +1.1
1,315,288 + ABZR87_RS22045 0.81 -0.6
1,315,288 + ABZR87_RS22045 0.81 -0.4
1,315,289 - ABZR87_RS22045 0.81 +0.7
1,315,292 + ABZR87_RS22045 0.81 +0.2
1,315,293 - ABZR87_RS22045 0.81 -0.9
1,315,293 - ABZR87_RS22045 0.81 -2.2
1,315,301 + ABZR87_RS22045 0.83 +0.1
1,315,370 + -1.1
1,315,509 + +0.0

Or see this region's nucleotide sequence