Experiment: soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19005 and ABZR87_RS19010 are separated by 79 nucleotides ABZR87_RS19010 and ABZR87_RS19015 are separated by 301 nucleotides ABZR87_RS19015 and ABZR87_RS19020 are separated by 2 nucleotides
ABZR87_RS19005: ABZR87_RS19005 - sensor domain-containing diguanylate cyclase, at 621,231 to 622,577
_RS19005
ABZR87_RS19010: ABZR87_RS19010 - acyloxyacyl hydrolase, at 622,657 to 623,220
_RS19010
ABZR87_RS19015: ABZR87_RS19015 - efflux transporter outer membrane subunit, at 623,522 to 625,027
_RS19015
ABZR87_RS19020: ABZR87_RS19020 - multidrug efflux RND transporter permease subunit, at 625,030 to 628,131
_RS19020
Position (kb) 623
624
625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 622.583 kb on + strand at 622.667 kb on + strand at 622.668 kb on - strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.677 kb on - strand at 622.677 kb on - strand at 622.677 kb on - strand at 622.745 kb on + strand, within ABZR87_RS19010 at 623.075 kb on + strand, within ABZR87_RS19010 at 623.076 kb on - strand, within ABZR87_RS19010 at 623.076 kb on - strand, within ABZR87_RS19010 at 623.108 kb on + strand, within ABZR87_RS19010 at 623.108 kb on + strand, within ABZR87_RS19010 at 623.429 kb on + strand at 623.429 kb on + strand at 623.429 kb on + strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.431 kb on + strand at 623.432 kb on - strand at 623.441 kb on + strand at 623.442 kb on - strand at 623.632 kb on - strand at 623.632 kb on - strand at 623.632 kb on - strand at 623.673 kb on + strand, within ABZR87_RS19015 at 623.673 kb on + strand, within ABZR87_RS19015 at 623.674 kb on - strand, within ABZR87_RS19015 at 623.674 kb on - strand, within ABZR87_RS19015 at 623.866 kb on - strand, within ABZR87_RS19015 at 623.887 kb on - strand, within ABZR87_RS19015 at 624.052 kb on - strand, within ABZR87_RS19015 at 624.363 kb on + strand, within ABZR87_RS19015 at 624.456 kb on + strand, within ABZR87_RS19015 at 624.456 kb on + strand, within ABZR87_RS19015 at 624.456 kb on + strand, within ABZR87_RS19015 at 624.456 kb on + strand, within ABZR87_RS19015 at 624.456 kb on + strand, within ABZR87_RS19015 at 624.457 kb on - strand, within ABZR87_RS19015 at 624.500 kb on + strand, within ABZR87_RS19015 at 624.501 kb on - strand, within ABZR87_RS19015 at 624.756 kb on + strand, within ABZR87_RS19015 at 624.906 kb on + strand at 624.906 kb on + strand at 624.906 kb on + strand at 624.906 kb on + strand at 624.906 kb on + strand at 624.907 kb on - strand at 624.907 kb on - strand at 624.907 kb on - strand at 624.907 kb on - strand at 624.939 kb on + strand at 624.940 kb on - strand at 625.115 kb on + strand at 625.115 kb on + strand at 625.133 kb on + strand at 625.134 kb on - strand at 625.134 kb on - strand at 625.504 kb on + strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.517 kb on + strand, within ABZR87_RS19020 at 625.518 kb on - strand, within ABZR87_RS19020 at 625.538 kb on + strand, within ABZR87_RS19020 at 625.539 kb on - strand, within ABZR87_RS19020 at 625.829 kb on + strand, within ABZR87_RS19020 at 625.829 kb on + strand, within ABZR87_RS19020 at 625.829 kb on + strand, within ABZR87_RS19020 at 625.829 kb on + strand, within ABZR87_RS19020 at 625.830 kb on - strand, within ABZR87_RS19020 at 625.830 kb on - strand, within ABZR87_RS19020 at 625.830 kb on - strand, within ABZR87_RS19020 at 625.830 kb on - strand, within ABZR87_RS19020 at 625.830 kb on - strand, within ABZR87_RS19020 at 625.863 kb on - strand, within ABZR87_RS19020 at 625.863 kb on - strand, within ABZR87_RS19020 at 625.892 kb on + strand, within ABZR87_RS19020 at 625.910 kb on + strand, within ABZR87_RS19020 at 625.910 kb on + strand, within ABZR87_RS19020 at 625.910 kb on + strand, within ABZR87_RS19020 at 625.911 kb on - strand, within ABZR87_RS19020 at 625.911 kb on - strand, within ABZR87_RS19020 at 625.921 kb on + strand, within ABZR87_RS19020 at 625.922 kb on - strand, within ABZR87_RS19020 at 625.922 kb on - strand, within ABZR87_RS19020
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 3; outgrowth in LB remove 622,583 + -1.3 622,667 + +1.3 622,668 - -0.5 622,676 + +0.2 622,676 + -0.1 622,676 + -0.9 622,676 + +0.4 622,677 - +0.4 622,677 - -2.2 622,677 - +2.0 622,745 + ABZR87_RS19010 0.16 +0.5 623,075 + ABZR87_RS19010 0.74 -0.1 623,076 - ABZR87_RS19010 0.74 +0.7 623,076 - ABZR87_RS19010 0.74 +0.6 623,108 + ABZR87_RS19010 0.80 -1.6 623,108 + ABZR87_RS19010 0.80 -2.2 623,429 + -0.3 623,429 + -0.1 623,429 + -1.6 623,430 - +0.2 623,430 - -0.4 623,430 - -0.4 623,430 - -0.6 623,430 - +0.6 623,430 - -0.4 623,430 - +0.1 623,430 - +0.1 623,431 + -0.5 623,432 - +0.7 623,441 + +0.3 623,442 - +0.6 623,632 - +0.2 623,632 - -0.5 623,632 - +0.6 623,673 + ABZR87_RS19015 0.10 -0.3 623,673 + ABZR87_RS19015 0.10 -1.6 623,674 - ABZR87_RS19015 0.10 +0.3 623,674 - ABZR87_RS19015 0.10 -0.4 623,866 - ABZR87_RS19015 0.23 -0.2 623,887 - ABZR87_RS19015 0.24 -0.1 624,052 - ABZR87_RS19015 0.35 -0.4 624,363 + ABZR87_RS19015 0.56 +0.4 624,456 + ABZR87_RS19015 0.62 +0.9 624,456 + ABZR87_RS19015 0.62 -0.0 624,456 + ABZR87_RS19015 0.62 +0.4 624,456 + ABZR87_RS19015 0.62 +0.3 624,456 + ABZR87_RS19015 0.62 -0.1 624,457 - ABZR87_RS19015 0.62 -0.7 624,500 + ABZR87_RS19015 0.65 -0.9 624,501 - ABZR87_RS19015 0.65 -0.2 624,756 + ABZR87_RS19015 0.82 +0.3 624,906 + +0.2 624,906 + +1.1 624,906 + -0.5 624,906 + +0.1 624,906 + -0.0 624,907 - +0.3 624,907 - +0.3 624,907 - +0.1 624,907 - +0.5 624,939 + -0.7 624,940 - -0.1 625,115 + -0.6 625,115 + -1.2 625,133 + -1.1 625,134 - -1.3 625,134 - -1.9 625,504 + ABZR87_RS19020 0.15 -0.8 625,505 - ABZR87_RS19020 0.15 -2.4 625,505 - ABZR87_RS19020 0.15 -1.6 625,505 - ABZR87_RS19020 0.15 -1.4 625,505 - ABZR87_RS19020 0.15 -1.6 625,505 - ABZR87_RS19020 0.15 +0.1 625,505 - ABZR87_RS19020 0.15 -1.9 625,505 - ABZR87_RS19020 0.15 -1.4 625,505 - ABZR87_RS19020 0.15 -3.7 625,508 + ABZR87_RS19020 0.15 -0.1 625,508 + ABZR87_RS19020 0.15 -1.6 625,508 + ABZR87_RS19020 0.15 -0.9 625,508 + ABZR87_RS19020 0.15 -1.4 625,508 + ABZR87_RS19020 0.15 +0.7 625,508 + ABZR87_RS19020 0.15 -0.1 625,508 + ABZR87_RS19020 0.15 -2.1 625,508 + ABZR87_RS19020 0.15 +2.7 625,509 - ABZR87_RS19020 0.15 -0.8 625,509 - ABZR87_RS19020 0.15 -2.2 625,509 - ABZR87_RS19020 0.15 +0.3 625,509 - ABZR87_RS19020 0.15 -0.2 625,509 - ABZR87_RS19020 0.15 -0.6 625,509 - ABZR87_RS19020 0.15 -0.7 625,509 - ABZR87_RS19020 0.15 -0.4 625,509 - ABZR87_RS19020 0.15 +0.4 625,509 - ABZR87_RS19020 0.15 -1.4 625,509 - ABZR87_RS19020 0.15 -1.9 625,509 - ABZR87_RS19020 0.15 -0.0 625,509 - ABZR87_RS19020 0.15 -0.7 625,509 - ABZR87_RS19020 0.15 -1.8 625,509 - ABZR87_RS19020 0.15 -1.1 625,517 + ABZR87_RS19020 0.16 -0.2 625,518 - ABZR87_RS19020 0.16 -0.5 625,538 + ABZR87_RS19020 0.16 +0.4 625,539 - ABZR87_RS19020 0.16 -0.9 625,829 + ABZR87_RS19020 0.26 +0.6 625,829 + ABZR87_RS19020 0.26 +1.3 625,829 + ABZR87_RS19020 0.26 -0.9 625,829 + ABZR87_RS19020 0.26 -0.3 625,830 - ABZR87_RS19020 0.26 -1.9 625,830 - ABZR87_RS19020 0.26 -1.2 625,830 - ABZR87_RS19020 0.26 +0.4 625,830 - ABZR87_RS19020 0.26 -1.0 625,830 - ABZR87_RS19020 0.26 -0.9 625,863 - ABZR87_RS19020 0.27 -0.3 625,863 - ABZR87_RS19020 0.27 +0.0 625,892 + ABZR87_RS19020 0.28 -2.7 625,910 + ABZR87_RS19020 0.28 -0.0 625,910 + ABZR87_RS19020 0.28 -1.8 625,910 + ABZR87_RS19020 0.28 -2.3 625,911 - ABZR87_RS19020 0.28 -1.4 625,911 - ABZR87_RS19020 0.28 -0.2 625,921 + ABZR87_RS19020 0.29 -0.2 625,922 - ABZR87_RS19020 0.29 -2.8 625,922 - ABZR87_RS19020 0.29 -2.3
Or see this region's nucleotide sequence