Experiment: soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16650 and ABZR87_RS16655 are separated by 99 nucleotides ABZR87_RS16655 and ABZR87_RS16660 are separated by 170 nucleotides ABZR87_RS16660 and ABZR87_RS16665 are separated by 134 nucleotides
ABZR87_RS16650: ABZR87_RS16650 - MFS transporter, at 84,716 to 85,930
_RS16650
ABZR87_RS16655: ABZR87_RS16655 - GntR family transcriptional regulator, at 86,030 to 86,866
_RS16655
ABZR87_RS16660: ABZR87_RS16660 - helix-turn-helix domain-containing protein, at 87,037 to 87,579
_RS16660
ABZR87_RS16665: ABZR87_RS16665 - GNAT family N-acetyltransferase, at 87,714 to 88,292
_RS16665
Position (kb) 86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 85.174 kb on + strand, within ABZR87_RS16650 at 85.174 kb on + strand, within ABZR87_RS16650 at 85.182 kb on - strand, within ABZR87_RS16650 at 85.182 kb on - strand, within ABZR87_RS16650 at 85.182 kb on - strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.187 kb on + strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.188 kb on - strand, within ABZR87_RS16650 at 85.308 kb on + strand, within ABZR87_RS16650 at 85.308 kb on + strand, within ABZR87_RS16650 at 85.309 kb on - strand, within ABZR87_RS16650 at 85.309 kb on - strand, within ABZR87_RS16650 at 85.684 kb on - strand, within ABZR87_RS16650 at 85.684 kb on - strand, within ABZR87_RS16650 at 85.818 kb on + strand at 85.818 kb on + strand at 85.818 kb on + strand at 85.819 kb on - strand at 85.819 kb on - strand at 85.943 kb on + strand at 85.944 kb on - strand at 85.944 kb on - strand at 85.944 kb on - strand at 85.977 kb on + strand at 85.978 kb on - strand at 85.978 kb on - strand at 85.978 kb on - strand at 86.010 kb on + strand at 86.010 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.102 kb on + strand at 86.103 kb on - strand at 86.103 kb on - strand at 86.103 kb on - strand at 86.103 kb on - strand at 86.103 kb on - strand at 86.172 kb on + strand, within ABZR87_RS16655 at 86.173 kb on - strand, within ABZR87_RS16655 at 86.194 kb on - strand, within ABZR87_RS16655 at 86.286 kb on + strand, within ABZR87_RS16655 at 86.286 kb on + strand, within ABZR87_RS16655 at 86.286 kb on + strand, within ABZR87_RS16655 at 86.286 kb on + strand, within ABZR87_RS16655 at 86.287 kb on - strand, within ABZR87_RS16655 at 86.287 kb on - strand, within ABZR87_RS16655 at 86.710 kb on - strand, within ABZR87_RS16655 at 86.710 kb on - strand, within ABZR87_RS16655 at 86.829 kb on + strand at 86.829 kb on + strand at 86.829 kb on + strand at 86.829 kb on + strand at 86.829 kb on + strand at 86.829 kb on + strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.830 kb on - strand at 86.842 kb on - strand at 86.842 kb on - strand at 86.842 kb on - strand at 86.842 kb on - strand at 86.842 kb on - strand at 86.842 kb on - strand at 86.850 kb on - strand at 86.942 kb on + strand at 86.942 kb on + strand at 86.942 kb on + strand at 86.943 kb on - strand at 86.943 kb on - strand at 86.972 kb on + strand at 86.972 kb on + strand at 86.972 kb on + strand at 87.025 kb on + strand at 87.026 kb on - strand at 87.026 kb on - strand at 87.026 kb on - strand at 87.039 kb on - strand at 87.057 kb on + strand at 87.058 kb on - strand at 87.096 kb on - strand, within ABZR87_RS16660 at 87.096 kb on - strand, within ABZR87_RS16660 at 87.231 kb on - strand, within ABZR87_RS16660 at 87.231 kb on - strand, within ABZR87_RS16660 at 87.333 kb on - strand, within ABZR87_RS16660 at 87.356 kb on + strand, within ABZR87_RS16660 at 87.356 kb on + strand, within ABZR87_RS16660 at 87.357 kb on - strand, within ABZR87_RS16660 at 87.357 kb on - strand, within ABZR87_RS16660 at 87.590 kb on + strand at 87.590 kb on + strand at 87.590 kb on + strand at 87.590 kb on + strand at 87.590 kb on + strand at 87.590 kb on + strand at 87.590 kb on + strand at 87.590 kb on + strand at 87.590 kb on + strand at 87.591 kb on - strand at 87.591 kb on - strand at 87.591 kb on - strand at 87.683 kb on + strand at 87.683 kb on + strand at 87.683 kb on + strand at 87.683 kb on + strand at 87.684 kb on - strand at 87.720 kb on + strand at 87.720 kb on + strand at 87.720 kb on + strand at 87.720 kb on + strand at 87.720 kb on + strand at 87.720 kb on + strand at 87.720 kb on + strand at 87.720 kb on + strand at 87.720 kb on + strand at 87.720 kb on + strand at 87.721 kb on - strand at 87.721 kb on - strand at 87.721 kb on - strand at 87.721 kb on - strand at 87.721 kb on - strand at 87.721 kb on - strand at 87.721 kb on - strand at 87.721 kb on - strand at 87.721 kb on - strand at 87.721 kb on - strand at 87.861 kb on + strand, within ABZR87_RS16665
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 3; outgrowth in LB remove 85,174 + ABZR87_RS16650 0.38 +0.5 85,174 + ABZR87_RS16650 0.38 +1.0 85,182 - ABZR87_RS16650 0.38 +0.1 85,182 - ABZR87_RS16650 0.38 -0.8 85,182 - ABZR87_RS16650 0.38 +0.5 85,187 + ABZR87_RS16650 0.39 +0.1 85,187 + ABZR87_RS16650 0.39 +1.9 85,187 + ABZR87_RS16650 0.39 -0.2 85,187 + ABZR87_RS16650 0.39 -1.1 85,187 + ABZR87_RS16650 0.39 +0.1 85,187 + ABZR87_RS16650 0.39 -0.8 85,187 + ABZR87_RS16650 0.39 -0.4 85,188 - ABZR87_RS16650 0.39 +0.9 85,188 - ABZR87_RS16650 0.39 -0.1 85,188 - ABZR87_RS16650 0.39 -0.8 85,188 - ABZR87_RS16650 0.39 -1.4 85,188 - ABZR87_RS16650 0.39 +1.5 85,188 - ABZR87_RS16650 0.39 -0.5 85,188 - ABZR87_RS16650 0.39 +0.8 85,188 - ABZR87_RS16650 0.39 -0.4 85,308 + ABZR87_RS16650 0.49 +0.6 85,308 + ABZR87_RS16650 0.49 +0.3 85,309 - ABZR87_RS16650 0.49 -0.5 85,309 - ABZR87_RS16650 0.49 +1.1 85,684 - ABZR87_RS16650 0.80 -0.3 85,684 - ABZR87_RS16650 0.80 -0.7 85,818 + -1.6 85,818 + -0.1 85,818 + -0.4 85,819 - -0.5 85,819 - +0.5 85,943 + -0.2 85,944 - +0.3 85,944 - +0.8 85,944 - -0.9 85,977 + -1.0 85,978 - -0.0 85,978 - -0.4 85,978 - +0.4 86,010 + +2.0 86,010 + -0.7 86,102 + -0.7 86,102 + -0.7 86,102 + -0.4 86,102 + -1.2 86,102 + +0.3 86,102 + -0.5 86,102 + +0.5 86,102 + -0.7 86,103 - +0.5 86,103 - +0.6 86,103 - -0.2 86,103 - -0.1 86,103 - -0.6 86,172 + ABZR87_RS16655 0.17 +0.9 86,173 - ABZR87_RS16655 0.17 -1.1 86,194 - ABZR87_RS16655 0.20 -0.5 86,286 + ABZR87_RS16655 0.31 +0.6 86,286 + ABZR87_RS16655 0.31 -0.3 86,286 + ABZR87_RS16655 0.31 -1.7 86,286 + ABZR87_RS16655 0.31 -0.5 86,287 - ABZR87_RS16655 0.31 -0.5 86,287 - ABZR87_RS16655 0.31 -1.3 86,710 - ABZR87_RS16655 0.81 -0.9 86,710 - ABZR87_RS16655 0.81 -1.4 86,829 + +0.2 86,829 + -0.6 86,829 + +0.6 86,829 + -1.3 86,829 + -0.9 86,829 + +0.9 86,830 - +0.5 86,830 - +0.5 86,830 - -1.8 86,830 - +1.1 86,830 - -0.7 86,830 - +0.1 86,830 - +1.0 86,830 - -0.8 86,830 - -0.0 86,830 - -0.2 86,830 - -0.2 86,830 - +0.9 86,842 - +1.1 86,842 - +0.0 86,842 - -0.9 86,842 - -0.2 86,842 - -0.6 86,842 - +0.5 86,850 - -1.0 86,942 + -0.1 86,942 + +0.5 86,942 + -1.2 86,943 - -0.3 86,943 - -0.4 86,972 + +0.4 86,972 + -0.4 86,972 + +0.3 87,025 + +0.1 87,026 - +0.1 87,026 - -0.3 87,026 - -0.5 87,039 - -0.0 87,057 + -1.6 87,058 - -0.5 87,096 - ABZR87_RS16660 0.11 -0.4 87,096 - ABZR87_RS16660 0.11 +0.4 87,231 - ABZR87_RS16660 0.36 -0.3 87,231 - ABZR87_RS16660 0.36 -0.3 87,333 - ABZR87_RS16660 0.55 -1.1 87,356 + ABZR87_RS16660 0.59 -0.6 87,356 + ABZR87_RS16660 0.59 -0.6 87,357 - ABZR87_RS16660 0.59 +1.1 87,357 - ABZR87_RS16660 0.59 -3.6 87,590 + +0.1 87,590 + -0.5 87,590 + +0.1 87,590 + -3.1 87,590 + +0.2 87,590 + +0.1 87,590 + +0.5 87,590 + +0.9 87,590 + +0.5 87,591 - +0.7 87,591 - -1.9 87,591 - +0.1 87,683 + -1.6 87,683 + -0.6 87,683 + +0.3 87,683 + +1.0 87,684 - -0.1 87,720 + -1.0 87,720 + -0.2 87,720 + +0.6 87,720 + -0.3 87,720 + -1.8 87,720 + +1.7 87,720 + -0.3 87,720 + +1.2 87,720 + +0.3 87,720 + +1.4 87,721 - +0.6 87,721 - +1.1 87,721 - +1.0 87,721 - -0.4 87,721 - +0.6 87,721 - +0.3 87,721 - -0.5 87,721 - -0.3 87,721 - -0.5 87,721 - +0.4 87,861 + ABZR87_RS16665 0.25 -0.7
Or see this region's nucleotide sequence