Experiment: soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16290 and ABZR87_RS16295 are separated by 291 nucleotides ABZR87_RS16295 and ABZR87_RS16300 are separated by 3 nucleotides
ABZR87_RS16290: ABZR87_RS16290 - UTP--glucose-1-phosphate uridylyltransferase GalU, at 4,855 to 5,805
_RS16290
ABZR87_RS16295: ABZR87_RS16295 - MFS transporter, at 6,097 to 7,437
_RS16295
ABZR87_RS16300: ABZR87_RS16300 - sensor histidine kinase, at 7,441 to 9,357
_RS16300
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.222 kb on + strand, within ABZR87_RS16290 at 5.223 kb on - strand, within ABZR87_RS16290 at 5.305 kb on + strand, within ABZR87_RS16290 at 5.305 kb on + strand, within ABZR87_RS16290 at 5.305 kb on + strand, within ABZR87_RS16290 at 5.306 kb on - strand, within ABZR87_RS16290 at 5.306 kb on - strand, within ABZR87_RS16290 at 5.306 kb on - strand, within ABZR87_RS16290 at 5.306 kb on - strand, within ABZR87_RS16290 at 5.306 kb on - strand, within ABZR87_RS16290 at 5.315 kb on - strand, within ABZR87_RS16290 at 5.480 kb on - strand, within ABZR87_RS16290 at 5.597 kb on - strand, within ABZR87_RS16290 at 5.642 kb on - strand, within ABZR87_RS16290 at 5.704 kb on + strand, within ABZR87_RS16290 at 5.704 kb on + strand, within ABZR87_RS16290 at 5.704 kb on + strand, within ABZR87_RS16290 at 5.704 kb on + strand, within ABZR87_RS16290 at 5.705 kb on - strand, within ABZR87_RS16290 at 5.705 kb on - strand, within ABZR87_RS16290 at 5.705 kb on - strand, within ABZR87_RS16290 at 5.705 kb on - strand, within ABZR87_RS16290 at 5.705 kb on - strand, within ABZR87_RS16290 at 5.809 kb on + strand at 5.809 kb on + strand at 5.810 kb on - strand at 5.984 kb on + strand at 5.989 kb on + strand at 5.989 kb on + strand at 5.989 kb on + strand at 5.990 kb on - strand at 5.990 kb on - strand at 6.005 kb on + strand at 6.232 kb on + strand, within ABZR87_RS16295 at 6.232 kb on + strand, within ABZR87_RS16295 at 6.232 kb on + strand, within ABZR87_RS16295 at 6.233 kb on - strand, within ABZR87_RS16295 at 6.241 kb on + strand, within ABZR87_RS16295 at 6.241 kb on + strand, within ABZR87_RS16295 at 6.241 kb on + strand, within ABZR87_RS16295 at 6.241 kb on + strand, within ABZR87_RS16295 at 6.242 kb on - strand, within ABZR87_RS16295 at 6.242 kb on - strand, within ABZR87_RS16295 at 6.242 kb on - strand, within ABZR87_RS16295 at 6.242 kb on - strand, within ABZR87_RS16295 at 6.242 kb on - strand, within ABZR87_RS16295 at 6.247 kb on + strand, within ABZR87_RS16295 at 6.248 kb on - strand, within ABZR87_RS16295 at 6.248 kb on - strand, within ABZR87_RS16295 at 6.248 kb on - strand, within ABZR87_RS16295 at 6.265 kb on + strand, within ABZR87_RS16295 at 6.265 kb on + strand, within ABZR87_RS16295 at 6.265 kb on + strand, within ABZR87_RS16295 at 6.266 kb on - strand, within ABZR87_RS16295 at 6.266 kb on - strand, within ABZR87_RS16295 at 6.266 kb on - strand, within ABZR87_RS16295 at 6.266 kb on - strand, within ABZR87_RS16295 at 6.382 kb on + strand, within ABZR87_RS16295 at 6.383 kb on - strand, within ABZR87_RS16295 at 6.383 kb on - strand, within ABZR87_RS16295 at 6.383 kb on - strand, within ABZR87_RS16295 at 6.383 kb on - strand, within ABZR87_RS16295 at 6.425 kb on + strand, within ABZR87_RS16295 at 6.472 kb on + strand, within ABZR87_RS16295 at 6.472 kb on + strand, within ABZR87_RS16295 at 6.472 kb on + strand, within ABZR87_RS16295 at 6.472 kb on + strand, within ABZR87_RS16295 at 6.473 kb on - strand, within ABZR87_RS16295 at 6.473 kb on - strand, within ABZR87_RS16295 at 6.473 kb on - strand, within ABZR87_RS16295 at 6.473 kb on - strand, within ABZR87_RS16295 at 6.551 kb on - strand, within ABZR87_RS16295 at 6.568 kb on + strand, within ABZR87_RS16295 at 6.568 kb on + strand, within ABZR87_RS16295 at 6.568 kb on + strand, within ABZR87_RS16295 at 6.568 kb on + strand, within ABZR87_RS16295 at 6.568 kb on + strand, within ABZR87_RS16295 at 6.569 kb on - strand, within ABZR87_RS16295 at 6.569 kb on - strand, within ABZR87_RS16295 at 6.607 kb on + strand, within ABZR87_RS16295 at 6.607 kb on + strand, within ABZR87_RS16295 at 6.608 kb on - strand, within ABZR87_RS16295 at 6.622 kb on + strand, within ABZR87_RS16295 at 6.622 kb on + strand, within ABZR87_RS16295 at 6.622 kb on + strand, within ABZR87_RS16295 at 6.623 kb on - strand, within ABZR87_RS16295 at 6.910 kb on + strand, within ABZR87_RS16295 at 6.910 kb on + strand, within ABZR87_RS16295 at 6.910 kb on + strand, within ABZR87_RS16295 at 6.910 kb on + strand, within ABZR87_RS16295 at 6.911 kb on - strand, within ABZR87_RS16295 at 6.911 kb on - strand, within ABZR87_RS16295 at 6.916 kb on + strand, within ABZR87_RS16295 at 6.917 kb on - strand, within ABZR87_RS16295 at 6.917 kb on - strand, within ABZR87_RS16295 at 6.925 kb on + strand, within ABZR87_RS16295 at 6.925 kb on + strand, within ABZR87_RS16295 at 6.925 kb on + strand, within ABZR87_RS16295 at 6.925 kb on + strand, within ABZR87_RS16295 at 6.926 kb on - strand, within ABZR87_RS16295 at 6.926 kb on - strand, within ABZR87_RS16295 at 6.926 kb on - strand, within ABZR87_RS16295 at 6.926 kb on - strand, within ABZR87_RS16295 at 6.926 kb on - strand, within ABZR87_RS16295 at 6.926 kb on - strand, within ABZR87_RS16295 at 6.926 kb on - strand, within ABZR87_RS16295 at 6.926 kb on - strand, within ABZR87_RS16295 at 6.926 kb on - strand, within ABZR87_RS16295 at 6.926 kb on - strand, within ABZR87_RS16295 at 7.090 kb on - strand, within ABZR87_RS16295 at 7.189 kb on + strand, within ABZR87_RS16295 at 7.190 kb on - strand, within ABZR87_RS16295 at 7.264 kb on + strand, within ABZR87_RS16295 at 7.264 kb on + strand, within ABZR87_RS16295 at 7.265 kb on - strand, within ABZR87_RS16295 at 7.274 kb on - strand, within ABZR87_RS16295 at 7.303 kb on + strand, within ABZR87_RS16295 at 7.303 kb on + strand, within ABZR87_RS16295 at 7.303 kb on + strand, within ABZR87_RS16295 at 7.304 kb on - strand at 7.304 kb on - strand at 7.304 kb on - strand at 7.304 kb on - strand at 7.304 kb on - strand at 7.348 kb on + strand at 7.348 kb on + strand at 7.348 kb on + strand at 7.348 kb on + strand at 7.348 kb on + strand at 7.349 kb on - strand at 7.349 kb on - strand at 7.349 kb on - strand at 7.349 kb on - strand at 7.349 kb on - strand at 7.354 kb on + strand at 7.354 kb on + strand at 7.354 kb on + strand at 7.354 kb on + strand at 7.354 kb on + strand at 7.354 kb on + strand at 7.354 kb on + strand at 7.355 kb on - strand at 7.355 kb on - strand at 7.390 kb on + strand at 7.390 kb on + strand at 7.390 kb on + strand at 7.390 kb on + strand at 7.390 kb on + strand at 7.390 kb on + strand at 7.391 kb on - strand at 7.391 kb on - strand at 7.391 kb on - strand at 7.556 kb on - strand at 7.576 kb on + strand at 7.577 kb on - strand at 7.622 kb on - strand at 7.654 kb on + strand, within ABZR87_RS16300 at 7.759 kb on + strand, within ABZR87_RS16300 at 7.759 kb on + strand, within ABZR87_RS16300 at 7.759 kb on + strand, within ABZR87_RS16300 at 7.760 kb on - strand, within ABZR87_RS16300 at 7.760 kb on - strand, within ABZR87_RS16300 at 7.813 kb on - strand, within ABZR87_RS16300 at 7.813 kb on - strand, within ABZR87_RS16300 at 7.813 kb on - strand, within ABZR87_RS16300 at 7.876 kb on + strand, within ABZR87_RS16300 at 7.876 kb on + strand, within ABZR87_RS16300 at 7.891 kb on + strand, within ABZR87_RS16300 at 7.892 kb on - strand, within ABZR87_RS16300 at 7.892 kb on - strand, within ABZR87_RS16300 at 7.892 kb on - strand, within ABZR87_RS16300 at 7.930 kb on + strand, within ABZR87_RS16300 at 7.930 kb on + strand, within ABZR87_RS16300 at 7.931 kb on - strand, within ABZR87_RS16300 at 7.931 kb on - strand, within ABZR87_RS16300 at 7.963 kb on + strand, within ABZR87_RS16300 at 8.067 kb on + strand, within ABZR87_RS16300 at 8.067 kb on + strand, within ABZR87_RS16300 at 8.106 kb on - strand, within ABZR87_RS16300 at 8.129 kb on - strand, within ABZR87_RS16300 at 8.188 kb on + strand, within ABZR87_RS16300 at 8.189 kb on - strand, within ABZR87_RS16300
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 3; outgrowth in LB remove 5,161 + ABZR87_RS16290 0.32 -0.1 5,161 + ABZR87_RS16290 0.32 -0.2 5,161 + ABZR87_RS16290 0.32 +1.4 5,161 + ABZR87_RS16290 0.32 -0.7 5,161 + ABZR87_RS16290 0.32 -0.6 5,161 + ABZR87_RS16290 0.32 -1.0 5,161 + ABZR87_RS16290 0.32 -0.1 5,162 - ABZR87_RS16290 0.32 -0.3 5,162 - ABZR87_RS16290 0.32 +0.4 5,162 - ABZR87_RS16290 0.32 +0.9 5,162 - ABZR87_RS16290 0.32 -0.9 5,162 - ABZR87_RS16290 0.32 -0.7 5,162 - ABZR87_RS16290 0.32 -1.2 5,162 - ABZR87_RS16290 0.32 +0.3 5,162 - ABZR87_RS16290 0.32 +0.9 5,222 + ABZR87_RS16290 0.39 -0.3 5,223 - ABZR87_RS16290 0.39 +0.4 5,305 + ABZR87_RS16290 0.47 -1.4 5,305 + ABZR87_RS16290 0.47 +0.8 5,305 + ABZR87_RS16290 0.47 -0.3 5,306 - ABZR87_RS16290 0.47 -0.7 5,306 - ABZR87_RS16290 0.47 +1.1 5,306 - ABZR87_RS16290 0.47 +0.4 5,306 - ABZR87_RS16290 0.47 +0.5 5,306 - ABZR87_RS16290 0.47 -0.5 5,315 - ABZR87_RS16290 0.48 +0.2 5,480 - ABZR87_RS16290 0.66 -0.8 5,597 - ABZR87_RS16290 0.78 +0.3 5,642 - ABZR87_RS16290 0.83 -0.1 5,704 + ABZR87_RS16290 0.89 +0.8 5,704 + ABZR87_RS16290 0.89 -0.0 5,704 + ABZR87_RS16290 0.89 -0.5 5,704 + ABZR87_RS16290 0.89 +0.4 5,705 - ABZR87_RS16290 0.89 -1.4 5,705 - ABZR87_RS16290 0.89 +0.5 5,705 - ABZR87_RS16290 0.89 +0.2 5,705 - ABZR87_RS16290 0.89 -1.1 5,705 - ABZR87_RS16290 0.89 +0.3 5,809 + -0.3 5,809 + +0.6 5,810 - -1.7 5,984 + -0.5 5,989 + +0.4 5,989 + +0.3 5,989 + -0.8 5,990 - +0.5 5,990 - +0.5 6,005 + -0.9 6,232 + ABZR87_RS16295 0.10 +0.1 6,232 + ABZR87_RS16295 0.10 +0.3 6,232 + ABZR87_RS16295 0.10 +0.6 6,233 - ABZR87_RS16295 0.10 +0.2 6,241 + ABZR87_RS16295 0.11 +0.7 6,241 + ABZR87_RS16295 0.11 +0.4 6,241 + ABZR87_RS16295 0.11 -0.1 6,241 + ABZR87_RS16295 0.11 -1.0 6,242 - ABZR87_RS16295 0.11 -0.2 6,242 - ABZR87_RS16295 0.11 -0.4 6,242 - ABZR87_RS16295 0.11 -0.9 6,242 - ABZR87_RS16295 0.11 -0.2 6,242 - ABZR87_RS16295 0.11 +0.4 6,247 + ABZR87_RS16295 0.11 -1.2 6,248 - ABZR87_RS16295 0.11 +0.4 6,248 - ABZR87_RS16295 0.11 +0.2 6,248 - ABZR87_RS16295 0.11 -0.4 6,265 + ABZR87_RS16295 0.13 +0.2 6,265 + ABZR87_RS16295 0.13 +0.0 6,265 + ABZR87_RS16295 0.13 -1.9 6,266 - ABZR87_RS16295 0.13 -0.2 6,266 - ABZR87_RS16295 0.13 -1.5 6,266 - ABZR87_RS16295 0.13 -0.5 6,266 - ABZR87_RS16295 0.13 -0.6 6,382 + ABZR87_RS16295 0.21 +0.9 6,383 - ABZR87_RS16295 0.21 -0.6 6,383 - ABZR87_RS16295 0.21 -0.9 6,383 - ABZR87_RS16295 0.21 -0.9 6,383 - ABZR87_RS16295 0.21 +0.8 6,425 + ABZR87_RS16295 0.24 +0.2 6,472 + ABZR87_RS16295 0.28 -0.3 6,472 + ABZR87_RS16295 0.28 +1.0 6,472 + ABZR87_RS16295 0.28 +0.2 6,472 + ABZR87_RS16295 0.28 -2.4 6,473 - ABZR87_RS16295 0.28 +0.4 6,473 - ABZR87_RS16295 0.28 +0.1 6,473 - ABZR87_RS16295 0.28 -0.9 6,473 - ABZR87_RS16295 0.28 +0.3 6,551 - ABZR87_RS16295 0.34 -1.4 6,568 + ABZR87_RS16295 0.35 -0.2 6,568 + ABZR87_RS16295 0.35 -0.5 6,568 + ABZR87_RS16295 0.35 -0.1 6,568 + ABZR87_RS16295 0.35 -0.9 6,568 + ABZR87_RS16295 0.35 -0.4 6,569 - ABZR87_RS16295 0.35 -0.0 6,569 - ABZR87_RS16295 0.35 -0.1 6,607 + ABZR87_RS16295 0.38 -1.3 6,607 + ABZR87_RS16295 0.38 +0.0 6,608 - ABZR87_RS16295 0.38 +1.1 6,622 + ABZR87_RS16295 0.39 -0.3 6,622 + ABZR87_RS16295 0.39 -0.9 6,622 + ABZR87_RS16295 0.39 -0.5 6,623 - ABZR87_RS16295 0.39 +0.3 6,910 + ABZR87_RS16295 0.61 +0.4 6,910 + ABZR87_RS16295 0.61 +1.0 6,910 + ABZR87_RS16295 0.61 +0.9 6,910 + ABZR87_RS16295 0.61 +0.6 6,911 - ABZR87_RS16295 0.61 +0.2 6,911 - ABZR87_RS16295 0.61 +0.5 6,916 + ABZR87_RS16295 0.61 +1.2 6,917 - ABZR87_RS16295 0.61 -0.4 6,917 - ABZR87_RS16295 0.61 +0.7 6,925 + ABZR87_RS16295 0.62 +0.7 6,925 + ABZR87_RS16295 0.62 +1.6 6,925 + ABZR87_RS16295 0.62 -0.1 6,925 + ABZR87_RS16295 0.62 +0.4 6,926 - ABZR87_RS16295 0.62 -0.3 6,926 - ABZR87_RS16295 0.62 -0.8 6,926 - ABZR87_RS16295 0.62 +0.6 6,926 - ABZR87_RS16295 0.62 +1.0 6,926 - ABZR87_RS16295 0.62 +0.2 6,926 - ABZR87_RS16295 0.62 -1.4 6,926 - ABZR87_RS16295 0.62 +0.5 6,926 - ABZR87_RS16295 0.62 -1.3 6,926 - ABZR87_RS16295 0.62 -0.1 6,926 - ABZR87_RS16295 0.62 -1.3 7,090 - ABZR87_RS16295 0.74 -0.1 7,189 + ABZR87_RS16295 0.81 +0.4 7,190 - ABZR87_RS16295 0.82 -0.1 7,264 + ABZR87_RS16295 0.87 -0.5 7,264 + ABZR87_RS16295 0.87 -0.7 7,265 - ABZR87_RS16295 0.87 -0.4 7,274 - ABZR87_RS16295 0.88 -0.0 7,303 + ABZR87_RS16295 0.90 -0.1 7,303 + ABZR87_RS16295 0.90 +0.1 7,303 + ABZR87_RS16295 0.90 -0.1 7,304 - -0.7 7,304 - +1.2 7,304 - -1.4 7,304 - +0.6 7,304 - +0.7 7,348 + -0.8 7,348 + -0.1 7,348 + +0.9 7,348 + +1.7 7,348 + -0.0 7,349 - -0.4 7,349 - +0.5 7,349 - -0.0 7,349 - +0.5 7,349 - -0.3 7,354 + +0.1 7,354 + +0.5 7,354 + -0.0 7,354 + +0.8 7,354 + -1.5 7,354 + +0.1 7,354 + +0.1 7,355 - -0.6 7,355 - -0.1 7,390 + +1.1 7,390 + +0.5 7,390 + +0.0 7,390 + -0.1 7,390 + +0.8 7,390 + -0.7 7,391 - -0.7 7,391 - +0.1 7,391 - +1.0 7,556 - +0.0 7,576 + -0.1 7,577 - -1.2 7,622 - +0.2 7,654 + ABZR87_RS16300 0.11 -1.8 7,759 + ABZR87_RS16300 0.17 -0.1 7,759 + ABZR87_RS16300 0.17 -0.8 7,759 + ABZR87_RS16300 0.17 +0.3 7,760 - ABZR87_RS16300 0.17 +0.3 7,760 - ABZR87_RS16300 0.17 +0.7 7,813 - ABZR87_RS16300 0.19 -0.2 7,813 - ABZR87_RS16300 0.19 +1.8 7,813 - ABZR87_RS16300 0.19 +0.5 7,876 + ABZR87_RS16300 0.23 +0.4 7,876 + ABZR87_RS16300 0.23 -1.8 7,891 + ABZR87_RS16300 0.23 -0.1 7,892 - ABZR87_RS16300 0.24 -1.9 7,892 - ABZR87_RS16300 0.24 +1.0 7,892 - ABZR87_RS16300 0.24 -0.4 7,930 + ABZR87_RS16300 0.26 -1.8 7,930 + ABZR87_RS16300 0.26 +1.7 7,931 - ABZR87_RS16300 0.26 +1.1 7,931 - ABZR87_RS16300 0.26 +1.3 7,963 + ABZR87_RS16300 0.27 +0.1 8,067 + ABZR87_RS16300 0.33 -0.9 8,067 + ABZR87_RS16300 0.33 -1.1 8,106 - ABZR87_RS16300 0.35 +1.0 8,129 - ABZR87_RS16300 0.36 +0.3 8,188 + ABZR87_RS16300 0.39 +0.2 8,189 - ABZR87_RS16300 0.39 -0.1
Or see this region's nucleotide sequence