Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11740

Experiment: soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11735 and ABZR87_RS11740 are separated by 320 nucleotidesABZR87_RS11740 and ABZR87_RS11745 are separated by 17 nucleotidesABZR87_RS11745 and ABZR87_RS11750 are separated by 10 nucleotides ABZR87_RS11735: ABZR87_RS11735 - chitin-binding domain-containing protein, at 2,488,544 to 2,488,909 _RS11735 ABZR87_RS11740: ABZR87_RS11740 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 2,489,230 to 2,490,132 _RS11740 ABZR87_RS11745: ABZR87_RS11745 - class IV adenylate cyclase, at 2,490,150 to 2,490,668 _RS11745 ABZR87_RS11750: ABZR87_RS11750 - succinyl-diaminopimelate desuccinylase, at 2,490,679 to 2,491,830 _RS11750 Position (kb) 2489 2490 2491Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2488.450 kb on + strandat 2488.507 kb on + strandat 2488.584 kb on + strand, within ABZR87_RS11735at 2489.231 kb on + strandat 2489.257 kb on + strandat 2489.495 kb on - strand, within ABZR87_RS11740at 2489.499 kb on - strand, within ABZR87_RS11740at 2489.525 kb on + strand, within ABZR87_RS11740at 2489.525 kb on + strand, within ABZR87_RS11740at 2489.525 kb on + strand, within ABZR87_RS11740at 2489.525 kb on + strand, within ABZR87_RS11740at 2489.526 kb on - strand, within ABZR87_RS11740at 2489.526 kb on - strand, within ABZR87_RS11740at 2489.526 kb on - strand, within ABZR87_RS11740at 2489.552 kb on + strand, within ABZR87_RS11740at 2489.552 kb on + strand, within ABZR87_RS11740at 2489.553 kb on - strand, within ABZR87_RS11740at 2489.720 kb on - strand, within ABZR87_RS11740at 2489.822 kb on + strand, within ABZR87_RS11740at 2489.822 kb on + strand, within ABZR87_RS11740at 2489.823 kb on - strand, within ABZR87_RS11740at 2489.861 kb on + strand, within ABZR87_RS11740at 2489.861 kb on + strand, within ABZR87_RS11740at 2489.862 kb on - strand, within ABZR87_RS11740at 2489.862 kb on - strand, within ABZR87_RS11740at 2489.996 kb on + strand, within ABZR87_RS11740at 2489.996 kb on + strand, within ABZR87_RS11740at 2489.996 kb on + strand, within ABZR87_RS11740at 2489.997 kb on - strand, within ABZR87_RS11740at 2490.072 kb on - strandat 2490.072 kb on - strandat 2490.181 kb on + strandat 2490.181 kb on + strandat 2490.181 kb on + strandat 2490.246 kb on + strand, within ABZR87_RS11745at 2490.269 kb on + strand, within ABZR87_RS11745at 2490.353 kb on - strand, within ABZR87_RS11745at 2490.448 kb on + strand, within ABZR87_RS11745at 2490.449 kb on - strand, within ABZR87_RS11745at 2490.487 kb on + strand, within ABZR87_RS11745at 2490.487 kb on + strand, within ABZR87_RS11745at 2490.487 kb on + strand, within ABZR87_RS11745at 2490.488 kb on - strand, within ABZR87_RS11745at 2490.488 kb on - strand, within ABZR87_RS11745

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 3; outgrowth in LB
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2,488,450 + -0.4
2,488,507 + -0.8
2,488,584 + ABZR87_RS11735 0.11 -0.3
2,489,231 + +0.6
2,489,257 + -0.3
2,489,495 - ABZR87_RS11740 0.29 +0.5
2,489,499 - ABZR87_RS11740 0.30 -0.2
2,489,525 + ABZR87_RS11740 0.33 +0.3
2,489,525 + ABZR87_RS11740 0.33 -0.3
2,489,525 + ABZR87_RS11740 0.33 +0.5
2,489,525 + ABZR87_RS11740 0.33 -0.1
2,489,526 - ABZR87_RS11740 0.33 +0.3
2,489,526 - ABZR87_RS11740 0.33 +0.5
2,489,526 - ABZR87_RS11740 0.33 -0.1
2,489,552 + ABZR87_RS11740 0.36 +2.5
2,489,552 + ABZR87_RS11740 0.36 -0.9
2,489,553 - ABZR87_RS11740 0.36 -1.5
2,489,720 - ABZR87_RS11740 0.54 +1.1
2,489,822 + ABZR87_RS11740 0.66 -0.0
2,489,822 + ABZR87_RS11740 0.66 +0.6
2,489,823 - ABZR87_RS11740 0.66 -0.3
2,489,861 + ABZR87_RS11740 0.70 -0.8
2,489,861 + ABZR87_RS11740 0.70 +1.2
2,489,862 - ABZR87_RS11740 0.70 +0.2
2,489,862 - ABZR87_RS11740 0.70 -0.2
2,489,996 + ABZR87_RS11740 0.85 +0.1
2,489,996 + ABZR87_RS11740 0.85 +0.4
2,489,996 + ABZR87_RS11740 0.85 +0.2
2,489,997 - ABZR87_RS11740 0.85 +3.4
2,490,072 - +0.6
2,490,072 - +0.1
2,490,181 + +0.8
2,490,181 + -0.1
2,490,181 + +0.9
2,490,246 + ABZR87_RS11745 0.18 +0.6
2,490,269 + ABZR87_RS11745 0.23 +0.4
2,490,353 - ABZR87_RS11745 0.39 +0.8
2,490,448 + ABZR87_RS11745 0.57 +0.3
2,490,449 - ABZR87_RS11745 0.58 +0.1
2,490,487 + ABZR87_RS11745 0.65 -2.7
2,490,487 + ABZR87_RS11745 0.65 +0.4
2,490,487 + ABZR87_RS11745 0.65 +0.5
2,490,488 - ABZR87_RS11745 0.65 +0.3
2,490,488 - ABZR87_RS11745 0.65 -0.2

Or see this region's nucleotide sequence