Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06400

Experiment: soil sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	soil sample 3; outgrowth in LB
1,363,036	+				-0.4
1,363,037	-				+1.5
1,363,037	-				-3.3
1,363,125	+				+0.1
1,363,125	+				-0.7
1,363,125	+				-0.5
1,363,125	+				-0.8
1,363,125	+				+1.4
1,363,126	-				+1.8
1,363,126	-				-0.3
1,363,126	-				-0.5
1,363,126	-				+0.2
1,363,228	+		ABZR87_RS06390	0.74	-0.4
1,363,228	+		ABZR87_RS06390	0.74	+0.9
1,363,228	+		ABZR87_RS06390	0.74	-0.1
1,363,228	+		ABZR87_RS06390	0.74	+0.0
1,363,228	+		ABZR87_RS06390	0.74	+0.3
1,363,228	+		ABZR87_RS06390	0.74	+0.3
1,363,228	+		ABZR87_RS06390	0.74	+0.6
1,363,228	+		ABZR87_RS06390	0.74	-0.5
1,363,228	+		ABZR87_RS06390	0.74	+0.1
1,363,228	+		ABZR87_RS06390	0.74	+0.4
1,363,229	-		ABZR87_RS06390	0.74	+0.8
1,363,229	-		ABZR87_RS06390	0.74	-1.6
1,363,229	-		ABZR87_RS06390	0.74	+0.4
1,363,229	-		ABZR87_RS06390	0.74	-0.6
1,363,229	-		ABZR87_RS06390	0.74	+0.5
1,363,229	-		ABZR87_RS06390	0.74	+0.4
1,363,229	-		ABZR87_RS06390	0.74	+0.1
1,363,229	-		ABZR87_RS06390	0.74	+1.8
1,363,229	-		ABZR87_RS06390	0.74	+0.6
1,363,229	-		ABZR87_RS06390	0.74	+0.1
1,363,229	-		ABZR87_RS06390	0.74	-0.8
1,363,229	-		ABZR87_RS06390	0.74	+0.8
1,363,229	-		ABZR87_RS06390	0.74	-0.0
1,363,443	+		ABZR87_RS06395	0.24	+1.5
1,363,443	+		ABZR87_RS06395	0.24	+1.6
1,363,443	+		ABZR87_RS06395	0.24	+0.8
1,363,443	+		ABZR87_RS06395	0.24	-2.3
1,363,444	-		ABZR87_RS06395	0.24	+1.3
1,363,444	-		ABZR87_RS06395	0.24	+1.0
1,363,444	-		ABZR87_RS06395	0.24	+1.1
1,363,444	-		ABZR87_RS06395	0.24	+0.7
1,363,503	+		ABZR87_RS06395	0.38	+2.4
1,363,503	+		ABZR87_RS06395	0.38	-1.1
1,363,504	-		ABZR87_RS06395	0.38	+1.1
1,363,504	-		ABZR87_RS06395	0.38	+1.1
1,363,602	+		ABZR87_RS06395	0.60	+1.9
1,363,602	+		ABZR87_RS06395	0.60	+1.4
1,363,602	+		ABZR87_RS06395	0.60	+0.5
1,363,602	+		ABZR87_RS06395	0.60	+0.6
1,363,602	+		ABZR87_RS06395	0.60	+3.4
1,363,602	+		ABZR87_RS06395	0.60	-0.5
1,363,603	-		ABZR87_RS06395	0.60	+1.5
1,363,603	-		ABZR87_RS06395	0.60	+1.7
1,363,603	-		ABZR87_RS06395	0.60	-1.1
1,363,603	-		ABZR87_RS06395	0.60	-0.1
1,363,603	-		ABZR87_RS06395	0.60	+1.9
1,363,603	-		ABZR87_RS06395	0.60	+1.7
1,363,603	-		ABZR87_RS06395	0.60	+0.4
1,363,686	+		ABZR87_RS06395	0.79	+0.8
1,363,686	+		ABZR87_RS06395	0.79	+1.4
1,363,686	+		ABZR87_RS06395	0.79	+2.7
1,363,686	+		ABZR87_RS06395	0.79	-1.4
1,363,687	-		ABZR87_RS06395	0.79	+1.4
1,363,687	-		ABZR87_RS06395	0.79	-0.1
1,363,789	-				-0.9
1,363,812	-				+1.2
1,363,812	-				+0.7
1,363,812	-				-1.1
1,363,826	+				-0.1
1,363,826	+				-1.0
1,363,826	+				+0.2
1,363,826	+				-1.4
1,363,826	+				-0.7
1,363,826	+				-0.1
1,363,827	-				-0.0
1,363,827	-				+2.8
1,363,827	-				+0.1
1,363,827	-				+0.4
1,363,827	-				-0.1
1,363,827	-				+0.2
1,363,827	-				+0.0
1,363,827	-				-0.8
1,363,827	-				+0.7
1,363,827	-				+0.3
1,363,827	-				-0.2
1,363,827	-				+1.4
1,363,830	+				-0.2
1,363,830	+				-0.1
1,363,830	+				-1.1
1,363,830	+				-1.6
1,363,831	-				-1.8
1,363,831	-				-0.9
1,363,880	+				+0.6
1,363,881	-				+1.2
1,363,907	+				-3.8
1,363,907	+				-4.4
1,363,907	+				-3.3
1,363,907	+				-1.9
1,363,908	-				-1.4
1,363,908	-				-3.0
1,363,908	-				-3.3
1,363,908	-				-2.8
1,363,908	-				-1.0
1,363,910	+				-2.8
1,363,910	+				-3.4
1,363,910	+				-4.0
1,363,911	-				-2.0
1,363,911	-				-1.7
1,363,911	-				-2.7
1,363,911	-				-1.6
1,363,964	+		ABZR87_RS06400	0.13	-3.5
1,363,965	-		ABZR87_RS06400	0.14	-3.3
1,363,965	-		ABZR87_RS06400	0.14	-3.7
1,363,965	-		ABZR87_RS06400	0.14	-4.8
1,364,141	+		ABZR87_RS06400	0.41	-2.2
1,364,141	+		ABZR87_RS06400	0.41	-3.9
1,364,141	+		ABZR87_RS06400	0.41	-2.4
1,364,141	+		ABZR87_RS06400	0.41	-4.0
1,364,141	+		ABZR87_RS06400	0.41	-3.1
1,364,141	+		ABZR87_RS06400	0.41	-3.3
1,364,142	-		ABZR87_RS06400	0.42	-4.6
1,364,142	-		ABZR87_RS06400	0.42	-1.2
1,364,142	-		ABZR87_RS06400	0.42	-3.5
1,364,164	-		ABZR87_RS06400	0.45	-4.4
1,364,210	+		ABZR87_RS06400	0.52	-5.4
1,364,210	+		ABZR87_RS06400	0.52	-3.7
1,364,246	+		ABZR87_RS06400	0.58	-3.0
1,364,246	+		ABZR87_RS06400	0.58	-2.6
1,364,247	-		ABZR87_RS06400	0.58	-1.7
1,364,521	+				-1.1
1,364,521	+				-0.1
1,364,521	+				-0.2
1,364,522	-				-0.3
1,364,522	-				+0.9
1,364,522	-				+0.6
1,364,522	-				+0.2
1,364,522	-				+0.2
1,364,522	-				-2.4
1,364,576	-				-1.6
1,364,589	+				-1.6
1,364,717	+				-0.4
1,364,718	-				+0.2
1,364,718	-				+1.4
1,364,734	-				-0.4
1,364,812	-				-1.0
1,364,812	-				-0.0
1,364,818	+				-1.8
1,364,818	+				+0.9
1,364,818	+				+1.0
1,364,818	+				-0.1
1,364,818	+				-0.6
1,364,818	+				-0.2
1,364,819	-				-0.4
1,364,819	-				+0.5
1,364,819	-				-0.7
1,364,819	-				-0.9
1,364,819	-				+0.2
1,364,819	-				-0.7
1,364,879	+		ABZR87_RS06405	0.15	-1.2
1,365,187	+		ABZR87_RS06405	0.87	+0.5
1,365,327	+				+0.1
1,365,327	+				+1.2
1,365,327	+				-1.3
1,365,328	-				+0.4
1,365,328	-				-0.1
1,365,328	-				-0.3
1,365,328	-				-1.1
1,365,328	-				-0.0
1,365,328	-				+0.5
1,365,328	-				-0.2
1,365,328	-				+0.9
1,365,353	+				-0.2
1,365,362	+				+2.0
1,365,362	+				-0.1
1,365,362	+				-0.1
1,365,362	+				-0.0
1,365,363	-				-1.2
1,365,363	-				-0.5
1,365,363	-				+0.6
1,365,363	-				-0.4
1,365,372	+				+1.3
1,365,372	+				-0.1
1,365,372	+				+0.5
1,365,372	+				+0.5
1,365,373	-				+1.8
1,365,373	-				-0.7
1,365,373	-				+0.9
1,365,373	-				-1.1
1,365,377	+				-0.2
1,365,377	+				-0.1
1,365,378	-				+0.6
1,365,378	-				+0.0
1,365,378	-				+0.8
1,365,378	-				+0.1
1,365,436	-				+1.3
1,365,436	-				-0.0
1,365,464	+				+1.1
1,365,464	+				+0.6
1,365,465	-				+0.6
1,365,465	-				-0.9