Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03475

Experiment: soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03470 and ABZR87_RS03475 are separated by 3 nucleotidesABZR87_RS03475 and ABZR87_RS03480 overlap by 4 nucleotides ABZR87_RS03470: ABZR87_RS03470 - PLP-dependent aminotransferase family protein, at 725,632 to 727,101 _RS03470 ABZR87_RS03475: ABZR87_RS03475 - N-acetyltransferase, at 727,105 to 727,767 _RS03475 ABZR87_RS03480: ABZR87_RS03480 - hypothetical protein, at 727,764 to 728,627 _RS03480 Position (kb) 727 728Strain fitness (log2 ratio) -3 -2 -1 0 1at 726.154 kb on + strand, within ABZR87_RS03470at 726.154 kb on + strand, within ABZR87_RS03470at 726.155 kb on - strand, within ABZR87_RS03470at 726.155 kb on - strand, within ABZR87_RS03470at 726.155 kb on - strand, within ABZR87_RS03470at 726.292 kb on + strand, within ABZR87_RS03470at 726.292 kb on + strand, within ABZR87_RS03470at 726.293 kb on - strand, within ABZR87_RS03470at 726.293 kb on - strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.431 kb on - strand, within ABZR87_RS03470at 726.431 kb on - strand, within ABZR87_RS03470at 726.520 kb on + strand, within ABZR87_RS03470at 726.520 kb on + strand, within ABZR87_RS03470at 726.520 kb on + strand, within ABZR87_RS03470at 726.521 kb on - strand, within ABZR87_RS03470at 726.595 kb on + strand, within ABZR87_RS03470at 726.595 kb on + strand, within ABZR87_RS03470at 726.596 kb on - strand, within ABZR87_RS03470at 726.596 kb on - strand, within ABZR87_RS03470at 726.596 kb on - strand, within ABZR87_RS03470at 726.596 kb on - strand, within ABZR87_RS03470at 726.596 kb on - strand, within ABZR87_RS03470at 726.596 kb on - strand, within ABZR87_RS03470at 726.643 kb on + strand, within ABZR87_RS03470at 726.643 kb on + strand, within ABZR87_RS03470at 726.793 kb on + strand, within ABZR87_RS03470at 726.793 kb on + strand, within ABZR87_RS03470at 726.793 kb on + strand, within ABZR87_RS03470at 726.793 kb on + strand, within ABZR87_RS03470at 726.794 kb on - strand, within ABZR87_RS03470at 726.794 kb on - strand, within ABZR87_RS03470at 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.025 kb on - strandat 727.221 kb on - strand, within ABZR87_RS03475at 727.250 kb on + strand, within ABZR87_RS03475at 727.250 kb on + strand, within ABZR87_RS03475at 727.251 kb on - strand, within ABZR87_RS03475at 727.262 kb on + strand, within ABZR87_RS03475at 727.263 kb on - strand, within ABZR87_RS03475at 727.263 kb on - strand, within ABZR87_RS03475at 727.397 kb on + strand, within ABZR87_RS03475at 727.398 kb on - strand, within ABZR87_RS03475at 727.505 kb on + strand, within ABZR87_RS03475at 727.505 kb on + strand, within ABZR87_RS03475at 727.505 kb on + strand, within ABZR87_RS03475at 727.506 kb on - strand, within ABZR87_RS03475at 727.506 kb on - strand, within ABZR87_RS03475at 727.511 kb on + strand, within ABZR87_RS03475at 727.511 kb on + strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.616 kb on + strand, within ABZR87_RS03475at 727.616 kb on + strand, within ABZR87_RS03475at 727.616 kb on + strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.867 kb on + strand, within ABZR87_RS03480at 727.867 kb on + strand, within ABZR87_RS03480at 727.868 kb on - strand, within ABZR87_RS03480at 727.876 kb on + strand, within ABZR87_RS03480at 728.269 kb on + strand, within ABZR87_RS03480at 728.269 kb on + strand, within ABZR87_RS03480at 728.391 kb on + strand, within ABZR87_RS03480at 728.392 kb on - strand, within ABZR87_RS03480at 728.392 kb on - strand, within ABZR87_RS03480at 728.392 kb on - strand, within ABZR87_RS03480at 728.392 kb on - strand, within ABZR87_RS03480at 728.511 kb on + strand, within ABZR87_RS03480at 728.536 kb on + strand, within ABZR87_RS03480at 728.537 kb on - strand, within ABZR87_RS03480at 728.566 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.567 kb on - strandat 728.567 kb on - strandat 728.567 kb on - strandat 728.567 kb on - strandat 728.741 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 3; outgrowth in LB
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726,154 + ABZR87_RS03470 0.36 +0.1
726,154 + ABZR87_RS03470 0.36 -0.4
726,155 - ABZR87_RS03470 0.36 -0.1
726,155 - ABZR87_RS03470 0.36 -0.2
726,155 - ABZR87_RS03470 0.36 -0.7
726,292 + ABZR87_RS03470 0.45 +0.1
726,292 + ABZR87_RS03470 0.45 -0.2
726,293 - ABZR87_RS03470 0.45 -0.0
726,293 - ABZR87_RS03470 0.45 -0.1
726,409 + ABZR87_RS03470 0.53 -0.0
726,409 + ABZR87_RS03470 0.53 +0.0
726,409 + ABZR87_RS03470 0.53 -0.3
726,409 + ABZR87_RS03470 0.53 -1.5
726,409 + ABZR87_RS03470 0.53 -0.3
726,409 + ABZR87_RS03470 0.53 +0.6
726,409 + ABZR87_RS03470 0.53 +0.2
726,409 + ABZR87_RS03470 0.53 -0.5
726,409 + ABZR87_RS03470 0.53 -0.1
726,410 - ABZR87_RS03470 0.53 +0.7
726,410 - ABZR87_RS03470 0.53 -0.1
726,410 - ABZR87_RS03470 0.53 -0.3
726,410 - ABZR87_RS03470 0.53 +0.0
726,410 - ABZR87_RS03470 0.53 +0.1
726,410 - ABZR87_RS03470 0.53 +0.0
726,410 - ABZR87_RS03470 0.53 -1.1
726,410 - ABZR87_RS03470 0.53 +0.4
726,431 - ABZR87_RS03470 0.54 +0.0
726,431 - ABZR87_RS03470 0.54 -0.2
726,520 + ABZR87_RS03470 0.60 +0.1
726,520 + ABZR87_RS03470 0.60 -0.2
726,520 + ABZR87_RS03470 0.60 -0.1
726,521 - ABZR87_RS03470 0.60 +0.9
726,595 + ABZR87_RS03470 0.66 -0.0
726,595 + ABZR87_RS03470 0.66 -0.7
726,596 - ABZR87_RS03470 0.66 -0.2
726,596 - ABZR87_RS03470 0.66 -0.0
726,596 - ABZR87_RS03470 0.66 +0.7
726,596 - ABZR87_RS03470 0.66 -0.3
726,596 - ABZR87_RS03470 0.66 -0.3
726,596 - ABZR87_RS03470 0.66 -1.0
726,643 + ABZR87_RS03470 0.69 +0.1
726,643 + ABZR87_RS03470 0.69 +0.2
726,793 + ABZR87_RS03470 0.79 -1.2
726,793 + ABZR87_RS03470 0.79 +0.6
726,793 + ABZR87_RS03470 0.79 +0.1
726,793 + ABZR87_RS03470 0.79 -0.3
726,794 - ABZR87_RS03470 0.79 -0.9
726,794 - ABZR87_RS03470 0.79 +0.1
727,003 + +0.5
727,003 + -0.5
727,003 + +0.9
727,003 + +0.8
727,003 + -0.7
727,003 + +0.0
727,003 + -0.8
727,004 - +0.5
727,004 - +0.9
727,004 - -0.8
727,004 - +0.2
727,004 - -0.1
727,004 - +0.3
727,004 - -0.4
727,004 - +1.1
727,004 - -0.6
727,025 - +0.3
727,221 - ABZR87_RS03475 0.17 +0.4
727,250 + ABZR87_RS03475 0.22 -0.0
727,250 + ABZR87_RS03475 0.22 -0.6
727,251 - ABZR87_RS03475 0.22 +0.8
727,262 + ABZR87_RS03475 0.24 -0.6
727,263 - ABZR87_RS03475 0.24 -0.4
727,263 - ABZR87_RS03475 0.24 -0.8
727,397 + ABZR87_RS03475 0.44 -2.3
727,398 - ABZR87_RS03475 0.44 -0.3
727,505 + ABZR87_RS03475 0.60 +0.2
727,505 + ABZR87_RS03475 0.60 +0.2
727,505 + ABZR87_RS03475 0.60 +0.2
727,506 - ABZR87_RS03475 0.60 +0.1
727,506 - ABZR87_RS03475 0.60 +1.5
727,511 + ABZR87_RS03475 0.61 +1.1
727,511 + ABZR87_RS03475 0.61 +0.6
727,512 - ABZR87_RS03475 0.61 -0.2
727,512 - ABZR87_RS03475 0.61 +1.6
727,512 - ABZR87_RS03475 0.61 -0.0
727,512 - ABZR87_RS03475 0.61 -3.0
727,512 - ABZR87_RS03475 0.61 +0.3
727,616 + ABZR87_RS03475 0.77 +0.1
727,616 + ABZR87_RS03475 0.77 +0.3
727,616 + ABZR87_RS03475 0.77 -0.3
727,617 - ABZR87_RS03475 0.77 -1.4
727,617 - ABZR87_RS03475 0.77 -0.1
727,617 - ABZR87_RS03475 0.77 +0.1
727,617 - ABZR87_RS03475 0.77 -0.1
727,617 - ABZR87_RS03475 0.77 +0.8
727,617 - ABZR87_RS03475 0.77 +0.8
727,617 - ABZR87_RS03475 0.77 -0.7
727,617 - ABZR87_RS03475 0.77 +0.2
727,617 - ABZR87_RS03475 0.77 +0.2
727,867 + ABZR87_RS03480 0.12 +0.5
727,867 + ABZR87_RS03480 0.12 -0.2
727,868 - ABZR87_RS03480 0.12 -0.8
727,876 + ABZR87_RS03480 0.13 +0.1
728,269 + ABZR87_RS03480 0.58 -0.3
728,269 + ABZR87_RS03480 0.58 +0.7
728,391 + ABZR87_RS03480 0.73 +0.1
728,392 - ABZR87_RS03480 0.73 +0.2
728,392 - ABZR87_RS03480 0.73 -0.6
728,392 - ABZR87_RS03480 0.73 -0.9
728,392 - ABZR87_RS03480 0.73 -0.8
728,511 + ABZR87_RS03480 0.86 +1.0
728,536 + ABZR87_RS03480 0.89 -0.4
728,537 - ABZR87_RS03480 0.89 -0.4
728,566 + -0.4
728,566 + -0.2
728,566 + -0.1
728,566 + +0.5
728,566 + -0.6
728,566 + +0.3
728,566 + +0.2
728,567 - +0.4
728,567 - -0.4
728,567 - -1.1
728,567 - -0.1
728,741 - -0.2

Or see this region's nucleotide sequence