Experiment: soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00630 and ABZR87_RS00635 are separated by 153 nucleotides ABZR87_RS00635 and ABZR87_RS00640 are separated by 179 nucleotides
ABZR87_RS00630: ABZR87_RS00630 - GntP family permease, at 129,965 to 131,365
_RS00630
ABZR87_RS00635: ABZR87_RS00635 - hypothetical protein, at 131,519 to 131,875
_RS00635
ABZR87_RS00640: ABZR87_RS00640 - MFS transporter, at 132,055 to 133,386
_RS00640
Position (kb) 131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.731 kb on + strand, within ABZR87_RS00630 at 130.732 kb on - strand, within ABZR87_RS00630 at 130.776 kb on + strand, within ABZR87_RS00630 at 130.816 kb on + strand, within ABZR87_RS00630 at 130.816 kb on + strand, within ABZR87_RS00630 at 130.995 kb on + strand, within ABZR87_RS00630 at 130.995 kb on + strand, within ABZR87_RS00630 at 130.995 kb on + strand, within ABZR87_RS00630 at 130.996 kb on - strand, within ABZR87_RS00630 at 130.996 kb on - strand, within ABZR87_RS00630 at 131.034 kb on + strand, within ABZR87_RS00630 at 131.181 kb on + strand, within ABZR87_RS00630 at 131.181 kb on + strand, within ABZR87_RS00630 at 131.182 kb on - strand, within ABZR87_RS00630 at 131.182 kb on - strand, within ABZR87_RS00630 at 131.182 kb on - strand, within ABZR87_RS00630 at 131.380 kb on + strand at 131.380 kb on + strand at 131.380 kb on + strand at 131.380 kb on + strand at 131.393 kb on + strand at 131.394 kb on - strand at 131.409 kb on + strand at 131.410 kb on - strand at 131.410 kb on - strand at 131.410 kb on - strand at 131.410 kb on - strand at 131.410 kb on - strand at 131.410 kb on - strand at 131.448 kb on + strand at 131.665 kb on - strand, within ABZR87_RS00635 at 131.665 kb on - strand, within ABZR87_RS00635 at 131.667 kb on + strand, within ABZR87_RS00635 at 131.667 kb on + strand, within ABZR87_RS00635 at 131.667 kb on + strand, within ABZR87_RS00635 at 131.667 kb on + strand, within ABZR87_RS00635 at 131.667 kb on + strand, within ABZR87_RS00635 at 131.667 kb on + strand, within ABZR87_RS00635 at 131.668 kb on - strand, within ABZR87_RS00635 at 131.679 kb on + strand, within ABZR87_RS00635 at 131.680 kb on - strand, within ABZR87_RS00635 at 131.680 kb on - strand, within ABZR87_RS00635 at 131.680 kb on - strand, within ABZR87_RS00635 at 131.682 kb on + strand, within ABZR87_RS00635 at 131.682 kb on + strand, within ABZR87_RS00635 at 131.682 kb on + strand, within ABZR87_RS00635 at 131.682 kb on + strand, within ABZR87_RS00635 at 131.682 kb on + strand, within ABZR87_RS00635 at 131.682 kb on + strand, within ABZR87_RS00635 at 131.683 kb on - strand, within ABZR87_RS00635 at 131.683 kb on - strand, within ABZR87_RS00635 at 131.683 kb on - strand, within ABZR87_RS00635 at 131.683 kb on - strand, within ABZR87_RS00635 at 131.683 kb on - strand, within ABZR87_RS00635 at 131.683 kb on - strand, within ABZR87_RS00635 at 131.685 kb on + strand, within ABZR87_RS00635 at 131.685 kb on + strand, within ABZR87_RS00635 at 131.685 kb on + strand, within ABZR87_RS00635 at 131.685 kb on + strand, within ABZR87_RS00635 at 131.685 kb on + strand, within ABZR87_RS00635 at 131.685 kb on + strand, within ABZR87_RS00635 at 131.686 kb on - strand, within ABZR87_RS00635 at 131.686 kb on - strand, within ABZR87_RS00635 at 131.686 kb on - strand, within ABZR87_RS00635 at 131.686 kb on - strand, within ABZR87_RS00635 at 131.686 kb on - strand, within ABZR87_RS00635 at 131.686 kb on - strand, within ABZR87_RS00635 at 131.688 kb on + strand, within ABZR87_RS00635 at 131.688 kb on + strand, within ABZR87_RS00635 at 131.688 kb on + strand, within ABZR87_RS00635 at 131.688 kb on + strand, within ABZR87_RS00635 at 131.688 kb on + strand, within ABZR87_RS00635 at 131.689 kb on - strand, within ABZR87_RS00635 at 131.689 kb on - strand, within ABZR87_RS00635 at 131.689 kb on - strand, within ABZR87_RS00635 at 131.689 kb on - strand, within ABZR87_RS00635 at 131.689 kb on - strand, within ABZR87_RS00635 at 131.697 kb on + strand, within ABZR87_RS00635 at 131.697 kb on + strand, within ABZR87_RS00635 at 131.698 kb on - strand, within ABZR87_RS00635 at 131.703 kb on + strand, within ABZR87_RS00635 at 131.712 kb on + strand, within ABZR87_RS00635 at 131.763 kb on + strand, within ABZR87_RS00635 at 131.763 kb on + strand, within ABZR87_RS00635 at 131.772 kb on + strand, within ABZR87_RS00635 at 131.772 kb on + strand, within ABZR87_RS00635 at 131.773 kb on - strand, within ABZR87_RS00635 at 131.773 kb on - strand, within ABZR87_RS00635 at 131.775 kb on + strand, within ABZR87_RS00635 at 131.775 kb on + strand, within ABZR87_RS00635 at 131.776 kb on - strand, within ABZR87_RS00635 at 131.902 kb on + strand at 131.902 kb on + strand at 131.902 kb on + strand at 131.903 kb on - strand at 131.979 kb on + strand at 131.979 kb on + strand at 131.980 kb on - strand at 131.980 kb on - strand at 131.980 kb on - strand at 131.980 kb on - strand at 131.980 kb on - strand at 132.034 kb on + strand at 132.034 kb on + strand at 132.035 kb on - strand at 132.075 kb on + strand at 132.178 kb on - strand at 132.184 kb on + strand at 132.184 kb on + strand at 132.184 kb on + strand at 132.184 kb on + strand at 132.319 kb on + strand, within ABZR87_RS00640 at 132.319 kb on + strand, within ABZR87_RS00640 at 132.320 kb on - strand, within ABZR87_RS00640 at 132.409 kb on + strand, within ABZR87_RS00640 at 132.410 kb on - strand, within ABZR87_RS00640 at 132.410 kb on - strand, within ABZR87_RS00640 at 132.517 kb on + strand, within ABZR87_RS00640 at 132.517 kb on + strand, within ABZR87_RS00640 at 132.518 kb on - strand, within ABZR87_RS00640 at 132.700 kb on + strand, within ABZR87_RS00640 at 132.700 kb on + strand, within ABZR87_RS00640 at 132.700 kb on + strand, within ABZR87_RS00640 at 132.700 kb on + strand, within ABZR87_RS00640 at 132.700 kb on + strand, within ABZR87_RS00640 at 132.701 kb on - strand, within ABZR87_RS00640 at 132.701 kb on - strand, within ABZR87_RS00640 at 132.701 kb on - strand, within ABZR87_RS00640 at 132.701 kb on - strand, within ABZR87_RS00640 at 132.701 kb on - strand, within ABZR87_RS00640 at 132.860 kb on - strand, within ABZR87_RS00640 at 132.874 kb on + strand, within ABZR87_RS00640 at 132.874 kb on + strand, within ABZR87_RS00640 at 132.874 kb on + strand, within ABZR87_RS00640 at 132.875 kb on - strand, within ABZR87_RS00640 at 132.875 kb on - strand, within ABZR87_RS00640 at 132.875 kb on - strand, within ABZR87_RS00640
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 3; outgrowth in LB remove 130,731 + ABZR87_RS00630 0.55 +0.5 130,732 - ABZR87_RS00630 0.55 -0.1 130,776 + ABZR87_RS00630 0.58 +0.5 130,816 + ABZR87_RS00630 0.61 -0.2 130,816 + ABZR87_RS00630 0.61 +1.4 130,995 + ABZR87_RS00630 0.74 +0.5 130,995 + ABZR87_RS00630 0.74 +1.4 130,995 + ABZR87_RS00630 0.74 -0.5 130,996 - ABZR87_RS00630 0.74 -0.1 130,996 - ABZR87_RS00630 0.74 +1.1 131,034 + ABZR87_RS00630 0.76 +1.4 131,181 + ABZR87_RS00630 0.87 +0.9 131,181 + ABZR87_RS00630 0.87 +0.1 131,182 - ABZR87_RS00630 0.87 -0.4 131,182 - ABZR87_RS00630 0.87 +1.3 131,182 - ABZR87_RS00630 0.87 +0.5 131,380 + -0.2 131,380 + -0.5 131,380 + +0.4 131,380 + +0.4 131,393 + +0.2 131,394 - -0.5 131,409 + -0.3 131,410 - -0.2 131,410 - -0.4 131,410 - +0.7 131,410 - -0.1 131,410 - -0.3 131,410 - -0.4 131,448 + +0.4 131,665 - ABZR87_RS00635 0.41 -2.3 131,665 - ABZR87_RS00635 0.41 -0.1 131,667 + ABZR87_RS00635 0.41 +0.7 131,667 + ABZR87_RS00635 0.41 +0.5 131,667 + ABZR87_RS00635 0.41 +1.6 131,667 + ABZR87_RS00635 0.41 +1.8 131,667 + ABZR87_RS00635 0.41 +0.5 131,667 + ABZR87_RS00635 0.41 +1.6 131,668 - ABZR87_RS00635 0.42 -0.2 131,679 + ABZR87_RS00635 0.45 -0.4 131,680 - ABZR87_RS00635 0.45 +0.2 131,680 - ABZR87_RS00635 0.45 -1.1 131,680 - ABZR87_RS00635 0.45 -0.9 131,682 + ABZR87_RS00635 0.46 -0.9 131,682 + ABZR87_RS00635 0.46 +0.1 131,682 + ABZR87_RS00635 0.46 +0.1 131,682 + ABZR87_RS00635 0.46 -0.2 131,682 + ABZR87_RS00635 0.46 -0.1 131,682 + ABZR87_RS00635 0.46 +0.1 131,683 - ABZR87_RS00635 0.46 +0.4 131,683 - ABZR87_RS00635 0.46 +0.4 131,683 - ABZR87_RS00635 0.46 +0.5 131,683 - ABZR87_RS00635 0.46 +0.8 131,683 - ABZR87_RS00635 0.46 -0.1 131,683 - ABZR87_RS00635 0.46 +0.2 131,685 + ABZR87_RS00635 0.46 -2.3 131,685 + ABZR87_RS00635 0.46 -0.6 131,685 + ABZR87_RS00635 0.46 +1.2 131,685 + ABZR87_RS00635 0.46 +0.8 131,685 + ABZR87_RS00635 0.46 -0.7 131,685 + ABZR87_RS00635 0.46 +0.1 131,686 - ABZR87_RS00635 0.47 -0.0 131,686 - ABZR87_RS00635 0.47 -0.2 131,686 - ABZR87_RS00635 0.47 +0.5 131,686 - ABZR87_RS00635 0.47 -0.6 131,686 - ABZR87_RS00635 0.47 +0.2 131,686 - ABZR87_RS00635 0.47 +0.7 131,688 + ABZR87_RS00635 0.47 -0.5 131,688 + ABZR87_RS00635 0.47 -0.8 131,688 + ABZR87_RS00635 0.47 +0.6 131,688 + ABZR87_RS00635 0.47 -0.3 131,688 + ABZR87_RS00635 0.47 -1.7 131,689 - ABZR87_RS00635 0.48 -0.3 131,689 - ABZR87_RS00635 0.48 +0.7 131,689 - ABZR87_RS00635 0.48 +0.0 131,689 - ABZR87_RS00635 0.48 -0.4 131,689 - ABZR87_RS00635 0.48 +1.4 131,697 + ABZR87_RS00635 0.50 -0.8 131,697 + ABZR87_RS00635 0.50 +0.1 131,698 - ABZR87_RS00635 0.50 -0.6 131,703 + ABZR87_RS00635 0.52 -0.6 131,712 + ABZR87_RS00635 0.54 -2.4 131,763 + ABZR87_RS00635 0.68 +0.6 131,763 + ABZR87_RS00635 0.68 -0.7 131,772 + ABZR87_RS00635 0.71 -0.1 131,772 + ABZR87_RS00635 0.71 -1.0 131,773 - ABZR87_RS00635 0.71 -2.1 131,773 - ABZR87_RS00635 0.71 -0.3 131,775 + ABZR87_RS00635 0.72 -0.9 131,775 + ABZR87_RS00635 0.72 +0.1 131,776 - ABZR87_RS00635 0.72 -0.5 131,902 + +0.5 131,902 + +0.4 131,902 + +0.3 131,903 - +0.2 131,979 + -1.6 131,979 + +0.2 131,980 - -0.0 131,980 - +0.3 131,980 - -0.4 131,980 - +0.6 131,980 - +0.5 132,034 + -0.3 132,034 + -0.7 132,035 - +0.4 132,075 + -0.1 132,178 - +0.0 132,184 + +1.2 132,184 + +0.3 132,184 + +0.4 132,184 + -0.3 132,319 + ABZR87_RS00640 0.20 -0.5 132,319 + ABZR87_RS00640 0.20 +0.8 132,320 - ABZR87_RS00640 0.20 +0.2 132,409 + ABZR87_RS00640 0.27 -0.1 132,410 - ABZR87_RS00640 0.27 +0.6 132,410 - ABZR87_RS00640 0.27 +1.1 132,517 + ABZR87_RS00640 0.35 -0.5 132,517 + ABZR87_RS00640 0.35 +0.4 132,518 - ABZR87_RS00640 0.35 -1.0 132,700 + ABZR87_RS00640 0.48 -1.3 132,700 + ABZR87_RS00640 0.48 -2.0 132,700 + ABZR87_RS00640 0.48 +0.6 132,700 + ABZR87_RS00640 0.48 -1.7 132,700 + ABZR87_RS00640 0.48 -1.4 132,701 - ABZR87_RS00640 0.48 -1.0 132,701 - ABZR87_RS00640 0.48 +0.8 132,701 - ABZR87_RS00640 0.48 -0.2 132,701 - ABZR87_RS00640 0.48 -0.6 132,701 - ABZR87_RS00640 0.48 -0.9 132,860 - ABZR87_RS00640 0.60 +0.4 132,874 + ABZR87_RS00640 0.61 -0.7 132,874 + ABZR87_RS00640 0.61 -2.2 132,874 + ABZR87_RS00640 0.61 -0.2 132,875 - ABZR87_RS00640 0.62 +0.3 132,875 - ABZR87_RS00640 0.62 -0.2 132,875 - ABZR87_RS00640 0.62 -0.2
Or see this region's nucleotide sequence