Experiment: Thallium(I) acetate 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0527 and Synpcc7942_0528 are separated by 354 nucleotides Synpcc7942_0528 and nagB overlap by 36 nucleotides nagB and Synpcc7942_0530 are separated by 3 nucleotides
Synpcc7942_0527: Synpcc7942_0527 - hypothetical protein, at 511,398 to 512,234
_0527
Synpcc7942_0528: Synpcc7942_0528 - Lipopolysaccharide biosynthesis proteins LPS, at 512,589 to 513,578
_0528
Synpcc7942_0529: nagB - 6-phosphogluconolactonase, at 513,543 to 514,331
nagB
Synpcc7942_0530: Synpcc7942_0530 - 4Fe-4S cluster binding, at 514,335 to 515,288
_0530
Position (kb) 512
513
514 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 511.653 kb on + strand, within Synpcc7942_0527 at 511.661 kb on - strand, within Synpcc7942_0527 at 511.671 kb on - strand, within Synpcc7942_0527 at 511.721 kb on - strand, within Synpcc7942_0527 at 511.762 kb on + strand, within Synpcc7942_0527 at 511.763 kb on + strand, within Synpcc7942_0527 at 511.770 kb on - strand, within Synpcc7942_0527 at 511.771 kb on - strand, within Synpcc7942_0527 at 511.771 kb on - strand, within Synpcc7942_0527 at 511.946 kb on - strand, within Synpcc7942_0527 at 511.960 kb on + strand, within Synpcc7942_0527 at 511.964 kb on - strand, within Synpcc7942_0527 at 511.968 kb on - strand, within Synpcc7942_0527 at 512.049 kb on - strand, within Synpcc7942_0527 at 512.068 kb on - strand, within Synpcc7942_0527 at 512.085 kb on + strand, within Synpcc7942_0527 at 512.092 kb on + strand, within Synpcc7942_0527 at 512.092 kb on + strand, within Synpcc7942_0527 at 512.095 kb on + strand, within Synpcc7942_0527 at 512.095 kb on + strand, within Synpcc7942_0527 at 512.100 kb on - strand, within Synpcc7942_0527 at 512.127 kb on - strand, within Synpcc7942_0527 at 512.129 kb on - strand, within Synpcc7942_0527 at 512.139 kb on - strand, within Synpcc7942_0527 at 512.144 kb on + strand, within Synpcc7942_0527 at 512.178 kb on - strand at 512.178 kb on - strand at 512.191 kb on + strand at 512.191 kb on + strand at 512.199 kb on - strand at 512.210 kb on - strand at 512.210 kb on - strand at 512.235 kb on + strand at 512.235 kb on + strand at 512.243 kb on - strand at 512.332 kb on - strand at 512.532 kb on + strand at 512.532 kb on + strand at 512.540 kb on - strand at 512.563 kb on + strand at 512.569 kb on + strand at 512.578 kb on + strand at 512.599 kb on - strand at 512.601 kb on + strand at 512.607 kb on + strand at 512.607 kb on + strand at 512.607 kb on + strand at 512.609 kb on - strand at 512.609 kb on - strand at 512.610 kb on - strand at 512.610 kb on - strand at 512.610 kb on - strand at 512.626 kb on - strand at 512.629 kb on - strand at 512.658 kb on + strand at 512.725 kb on - strand, within Synpcc7942_0528 at 512.757 kb on + strand, within Synpcc7942_0528 at 512.799 kb on - strand, within Synpcc7942_0528 at 512.812 kb on + strand, within Synpcc7942_0528 at 512.814 kb on + strand, within Synpcc7942_0528 at 512.879 kb on - strand, within Synpcc7942_0528 at 512.921 kb on + strand, within Synpcc7942_0528 at 512.943 kb on + strand, within Synpcc7942_0528 at 512.951 kb on - strand, within Synpcc7942_0528 at 512.957 kb on - strand, within Synpcc7942_0528 at 512.962 kb on + strand, within Synpcc7942_0528 at 512.970 kb on - strand, within Synpcc7942_0528 at 512.973 kb on + strand, within Synpcc7942_0528 at 512.983 kb on + strand, within Synpcc7942_0528 at 513.024 kb on + strand, within Synpcc7942_0528 at 513.029 kb on - strand, within Synpcc7942_0528 at 513.049 kb on + strand, within Synpcc7942_0528 at 513.160 kb on - strand, within Synpcc7942_0528 at 513.162 kb on - strand, within Synpcc7942_0528 at 513.171 kb on - strand, within Synpcc7942_0528 at 513.182 kb on + strand, within Synpcc7942_0528 at 513.203 kb on + strand, within Synpcc7942_0528 at 513.249 kb on + strand, within Synpcc7942_0528 at 513.251 kb on + strand, within Synpcc7942_0528 at 513.257 kb on - strand, within Synpcc7942_0528 at 513.262 kb on - strand, within Synpcc7942_0528 at 513.378 kb on + strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.416 kb on + strand, within Synpcc7942_0528 at 513.418 kb on - strand, within Synpcc7942_0528 at 513.447 kb on + strand, within Synpcc7942_0528 at 513.460 kb on - strand, within Synpcc7942_0528 at 513.476 kb on - strand, within Synpcc7942_0528 at 513.488 kb on + strand at 513.496 kb on - strand at 513.499 kb on + strand at 513.512 kb on + strand at 513.516 kb on + strand at 513.516 kb on + strand at 513.519 kb on - strand at 513.520 kb on - strand at 513.524 kb on - strand at 513.524 kb on - strand at 513.533 kb on + strand at 513.547 kb on - strand at 513.559 kb on - strand at 513.561 kb on + strand at 513.564 kb on - strand at 513.564 kb on - strand at 513.575 kb on + strand at 513.581 kb on + strand at 513.583 kb on - strand at 513.593 kb on - strand at 513.593 kb on - strand at 513.596 kb on + strand at 513.596 kb on + strand at 513.605 kb on - strand at 513.630 kb on + strand, within nagB at 513.671 kb on - strand, within nagB at 513.693 kb on - strand, within nagB at 513.723 kb on - strand, within nagB at 513.735 kb on + strand, within nagB at 513.754 kb on - strand, within nagB at 513.765 kb on + strand, within nagB at 513.766 kb on - strand, within nagB at 513.775 kb on + strand, within nagB at 513.799 kb on + strand, within nagB at 513.814 kb on - strand, within nagB at 513.816 kb on + strand, within nagB at 513.856 kb on + strand, within nagB at 513.858 kb on - strand, within nagB at 513.908 kb on + strand, within nagB at 513.916 kb on - strand, within nagB at 513.940 kb on - strand, within nagB at 513.990 kb on + strand, within nagB at 513.990 kb on + strand, within nagB at 514.004 kb on - strand, within nagB at 514.019 kb on - strand, within nagB at 514.027 kb on + strand, within nagB at 514.067 kb on - strand, within nagB at 514.080 kb on + strand, within nagB at 514.088 kb on - strand, within nagB at 514.088 kb on - strand, within nagB at 514.094 kb on + strand, within nagB at 514.247 kb on - strand, within nagB at 514.272 kb on - strand at 514.289 kb on + strand at 514.297 kb on - strand at 514.330 kb on + strand at 514.358 kb on + strand at 514.361 kb on - strand at 514.361 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.392 kb on - strand at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.527 kb on + strand, within Synpcc7942_0530 at 514.540 kb on + strand, within Synpcc7942_0530 at 514.552 kb on - strand, within Synpcc7942_0530 at 514.559 kb on + strand, within Synpcc7942_0530 at 514.561 kb on + strand, within Synpcc7942_0530 at 514.562 kb on - strand, within Synpcc7942_0530 at 514.567 kb on - strand, within Synpcc7942_0530
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0009765625 mg/ml remove 511,653 + Synpcc7942_0527 0.30 +1.7 511,661 - Synpcc7942_0527 0.31 -1.6 511,671 - Synpcc7942_0527 0.33 +1.3 511,721 - Synpcc7942_0527 0.39 -0.1 511,762 + Synpcc7942_0527 0.43 -1.3 511,763 + Synpcc7942_0527 0.44 +0.2 511,770 - Synpcc7942_0527 0.44 +0.8 511,771 - Synpcc7942_0527 0.45 -0.6 511,771 - Synpcc7942_0527 0.45 +1.3 511,946 - Synpcc7942_0527 0.65 +1.3 511,960 + Synpcc7942_0527 0.67 -0.6 511,964 - Synpcc7942_0527 0.68 +1.5 511,968 - Synpcc7942_0527 0.68 +0.8 512,049 - Synpcc7942_0527 0.78 +1.7 512,068 - Synpcc7942_0527 0.80 +0.3 512,085 + Synpcc7942_0527 0.82 -0.6 512,092 + Synpcc7942_0527 0.83 +0.4 512,092 + Synpcc7942_0527 0.83 +1.4 512,095 + Synpcc7942_0527 0.83 +1.0 512,095 + Synpcc7942_0527 0.83 +0.0 512,100 - Synpcc7942_0527 0.84 +0.2 512,127 - Synpcc7942_0527 0.87 -0.2 512,129 - Synpcc7942_0527 0.87 +0.8 512,139 - Synpcc7942_0527 0.89 +0.6 512,144 + Synpcc7942_0527 0.89 +1.1 512,178 - -1.6 512,178 - -1.6 512,191 + -0.4 512,191 + +0.9 512,199 - -3.1 512,210 - +0.4 512,210 - +0.1 512,235 + -1.7 512,235 + -0.8 512,243 - +0.3 512,332 - -1.6 512,532 + -1.6 512,532 + +0.2 512,540 - +2.0 512,563 + -2.6 512,569 + +1.1 512,578 + -3.9 512,599 - -1.6 512,601 + -0.6 512,607 + +1.9 512,607 + -2.9 512,607 + -2.1 512,609 - -0.4 512,609 - -2.1 512,610 - +0.4 512,610 - -1.6 512,610 - -0.9 512,626 - -0.8 512,629 - +0.4 512,658 + -1.1 512,725 - Synpcc7942_0528 0.14 +0.3 512,757 + Synpcc7942_0528 0.17 -2.1 512,799 - Synpcc7942_0528 0.21 -1.2 512,812 + Synpcc7942_0528 0.23 -0.9 512,814 + Synpcc7942_0528 0.23 -4.1 512,879 - Synpcc7942_0528 0.29 -0.9 512,921 + Synpcc7942_0528 0.34 -0.6 512,943 + Synpcc7942_0528 0.36 -1.6 512,951 - Synpcc7942_0528 0.37 -3.6 512,957 - Synpcc7942_0528 0.37 -0.8 512,962 + Synpcc7942_0528 0.38 -1.6 512,970 - Synpcc7942_0528 0.38 -1.8 512,973 + Synpcc7942_0528 0.39 -0.1 512,983 + Synpcc7942_0528 0.40 -1.0 513,024 + Synpcc7942_0528 0.44 -2.6 513,029 - Synpcc7942_0528 0.44 -1.6 513,049 + Synpcc7942_0528 0.46 -0.8 513,160 - Synpcc7942_0528 0.58 -1.3 513,162 - Synpcc7942_0528 0.58 +0.4 513,171 - Synpcc7942_0528 0.59 -1.6 513,182 + Synpcc7942_0528 0.60 -1.1 513,203 + Synpcc7942_0528 0.62 -2.6 513,249 + Synpcc7942_0528 0.67 +0.2 513,251 + Synpcc7942_0528 0.67 -1.0 513,257 - Synpcc7942_0528 0.67 -1.0 513,262 - Synpcc7942_0528 0.68 -2.3 513,378 + Synpcc7942_0528 0.80 -2.6 513,386 - Synpcc7942_0528 0.81 -2.6 513,386 - Synpcc7942_0528 0.81 -2.6 513,386 - Synpcc7942_0528 0.81 -1.6 513,386 - Synpcc7942_0528 0.81 -2.4 513,416 + Synpcc7942_0528 0.84 -1.6 513,418 - Synpcc7942_0528 0.84 -1.6 513,447 + Synpcc7942_0528 0.87 -0.6 513,460 - Synpcc7942_0528 0.88 -0.6 513,476 - Synpcc7942_0528 0.90 -2.6 513,488 + +1.0 513,496 - -0.6 513,499 + -2.7 513,512 + -1.1 513,516 + -3.1 513,516 + +1.4 513,519 - -1.3 513,520 - -1.6 513,524 - +0.3 513,524 - -1.2 513,533 + -1.6 513,547 - +0.6 513,559 - +0.8 513,561 + -1.6 513,564 - +1.2 513,564 - +0.8 513,575 + -1.8 513,581 + -3.1 513,583 - -0.1 513,593 - +0.2 513,593 - -0.6 513,596 + -3.6 513,596 + -0.4 513,605 - +0.1 513,630 + nagB Synpcc7942_0529 0.11 +0.7 513,671 - nagB Synpcc7942_0529 0.16 +1.2 513,693 - nagB Synpcc7942_0529 0.19 +1.6 513,723 - nagB Synpcc7942_0529 0.23 +1.3 513,735 + nagB Synpcc7942_0529 0.24 +0.8 513,754 - nagB Synpcc7942_0529 0.27 +0.2 513,765 + nagB Synpcc7942_0529 0.28 -0.6 513,766 - nagB Synpcc7942_0529 0.28 +2.0 513,775 + nagB Synpcc7942_0529 0.29 +0.3 513,799 + nagB Synpcc7942_0529 0.32 -0.6 513,814 - nagB Synpcc7942_0529 0.34 +1.2 513,816 + nagB Synpcc7942_0529 0.35 +0.0 513,856 + nagB Synpcc7942_0529 0.40 +1.6 513,858 - nagB Synpcc7942_0529 0.40 -1.3 513,908 + nagB Synpcc7942_0529 0.46 +1.1 513,916 - nagB Synpcc7942_0529 0.47 +0.0 513,940 - nagB Synpcc7942_0529 0.50 +0.0 513,990 + nagB Synpcc7942_0529 0.57 +0.4 513,990 + nagB Synpcc7942_0529 0.57 +1.3 514,004 - nagB Synpcc7942_0529 0.58 +0.8 514,019 - nagB Synpcc7942_0529 0.60 +0.6 514,027 + nagB Synpcc7942_0529 0.61 -1.6 514,067 - nagB Synpcc7942_0529 0.66 +0.3 514,080 + nagB Synpcc7942_0529 0.68 +2.1 514,088 - nagB Synpcc7942_0529 0.69 +0.9 514,088 - nagB Synpcc7942_0529 0.69 +0.6 514,094 + nagB Synpcc7942_0529 0.70 +1.0 514,247 - nagB Synpcc7942_0529 0.89 +0.5 514,272 - +1.0 514,289 + +1.2 514,297 - +1.4 514,330 + -0.5 514,358 + -0.9 514,361 - +1.0 514,361 - -1.0 514,366 - +1.9 514,366 - -1.3 514,366 - +0.2 514,366 - +1.0 514,366 - +2.7 514,366 - +0.0 514,392 - -1.6 514,458 + Synpcc7942_0530 0.13 +1.4 514,458 + Synpcc7942_0530 0.13 +0.9 514,458 + Synpcc7942_0530 0.13 +0.8 514,458 + Synpcc7942_0530 0.13 +1.4 514,458 + Synpcc7942_0530 0.13 +1.2 514,466 - Synpcc7942_0530 0.14 +1.4 514,466 - Synpcc7942_0530 0.14 +0.0 514,466 - Synpcc7942_0530 0.14 +2.5 514,466 - Synpcc7942_0530 0.14 -0.5 514,466 - Synpcc7942_0530 0.14 +1.9 514,527 + Synpcc7942_0530 0.20 +0.6 514,540 + Synpcc7942_0530 0.21 -0.5 514,552 - Synpcc7942_0530 0.23 +1.5 514,559 + Synpcc7942_0530 0.23 -0.6 514,561 + Synpcc7942_0530 0.24 +0.5 514,562 - Synpcc7942_0530 0.24 +0.0 514,567 - Synpcc7942_0530 0.24 -0.7
Or see this region's nucleotide sequence