Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS35215 and RR42_RS35220 are separated by 37 nucleotides RR42_RS35220 and RR42_RS35225 are separated by 72 nucleotides
RR42_RS35215: RR42_RS35215 - peptide ABC transporter ATP-binding protein, at 3,353,163 to 3,354,152
_RS35215
RR42_RS35220: RR42_RS35220 - peptide ABC transporter ATP-binding protein, at 3,354,190 to 3,355,173
_RS35220
RR42_RS35225: RR42_RS35225 - peptide ABC transporter substrate-binding protein, at 3,355,246 to 3,356,958
_RS35225
Position (kb) 3354
3355
3356 Strain fitness (log2 ratio) -1
0
1
2 at 3353.395 kb on + strand, within RR42_RS35215 at 3353.395 kb on + strand, within RR42_RS35215 at 3353.416 kb on + strand, within RR42_RS35215 at 3353.417 kb on - strand, within RR42_RS35215 at 3353.417 kb on - strand, within RR42_RS35215 at 3353.417 kb on - strand, within RR42_RS35215 at 3353.418 kb on + strand, within RR42_RS35215 at 3353.419 kb on - strand, within RR42_RS35215 at 3353.519 kb on + strand, within RR42_RS35215 at 3353.519 kb on + strand, within RR42_RS35215 at 3353.519 kb on + strand, within RR42_RS35215 at 3353.520 kb on - strand, within RR42_RS35215 at 3353.521 kb on + strand, within RR42_RS35215 at 3353.522 kb on - strand, within RR42_RS35215 at 3353.522 kb on - strand, within RR42_RS35215 at 3353.522 kb on - strand, within RR42_RS35215 at 3353.584 kb on - strand, within RR42_RS35215 at 3353.705 kb on + strand, within RR42_RS35215 at 3353.706 kb on - strand, within RR42_RS35215 at 3353.707 kb on + strand, within RR42_RS35215 at 3353.707 kb on + strand, within RR42_RS35215 at 3353.707 kb on + strand, within RR42_RS35215 at 3353.708 kb on - strand, within RR42_RS35215 at 3353.854 kb on + strand, within RR42_RS35215 at 3354.045 kb on + strand, within RR42_RS35215 at 3354.483 kb on - strand, within RR42_RS35220 at 3354.483 kb on - strand, within RR42_RS35220 at 3354.506 kb on + strand, within RR42_RS35220 at 3355.340 kb on + strand at 3355.340 kb on + strand at 3355.341 kb on - strand at 3355.371 kb on - strand at 3355.377 kb on - strand at 3355.395 kb on + strand at 3355.396 kb on - strand at 3355.397 kb on + strand at 3355.398 kb on - strand at 3355.398 kb on - strand at 3355.497 kb on - strand, within RR42_RS35225 at 3355.576 kb on - strand, within RR42_RS35225 at 3355.576 kb on - strand, within RR42_RS35225 at 3355.688 kb on + strand, within RR42_RS35225 at 3355.688 kb on + strand, within RR42_RS35225 at 3355.811 kb on + strand, within RR42_RS35225 at 3356.015 kb on + strand, within RR42_RS35225 at 3356.015 kb on + strand, within RR42_RS35225 at 3356.016 kb on - strand, within RR42_RS35225 at 3356.016 kb on - strand, within RR42_RS35225 at 3356.016 kb on - strand, within RR42_RS35225
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 3,353,395 + RR42_RS35215 0.23 +0.7 3,353,395 + RR42_RS35215 0.23 +0.2 3,353,416 + RR42_RS35215 0.26 -0.3 3,353,417 - RR42_RS35215 0.26 +0.0 3,353,417 - RR42_RS35215 0.26 +0.0 3,353,417 - RR42_RS35215 0.26 +0.9 3,353,418 + RR42_RS35215 0.26 +0.0 3,353,419 - RR42_RS35215 0.26 -0.7 3,353,519 + RR42_RS35215 0.36 -0.5 3,353,519 + RR42_RS35215 0.36 -0.8 3,353,519 + RR42_RS35215 0.36 -0.8 3,353,520 - RR42_RS35215 0.36 +0.5 3,353,521 + RR42_RS35215 0.36 -0.8 3,353,522 - RR42_RS35215 0.36 -1.1 3,353,522 - RR42_RS35215 0.36 -0.4 3,353,522 - RR42_RS35215 0.36 -0.3 3,353,584 - RR42_RS35215 0.43 +1.3 3,353,705 + RR42_RS35215 0.55 -0.2 3,353,706 - RR42_RS35215 0.55 +0.1 3,353,707 + RR42_RS35215 0.55 +0.1 3,353,707 + RR42_RS35215 0.55 +0.6 3,353,707 + RR42_RS35215 0.55 +0.1 3,353,708 - RR42_RS35215 0.55 +0.6 3,353,854 + RR42_RS35215 0.70 +0.2 3,354,045 + RR42_RS35215 0.89 +1.6 3,354,483 - RR42_RS35220 0.30 +0.5 3,354,483 - RR42_RS35220 0.30 +0.8 3,354,506 + RR42_RS35220 0.32 +0.9 3,355,340 + -0.1 3,355,340 + +1.2 3,355,341 - +0.3 3,355,371 - +2.5 3,355,377 - -0.4 3,355,395 + +0.3 3,355,396 - -1.7 3,355,397 + +0.9 3,355,398 - -0.3 3,355,398 - -0.4 3,355,497 - RR42_RS35225 0.15 -0.2 3,355,576 - RR42_RS35225 0.19 -0.3 3,355,576 - RR42_RS35225 0.19 -0.2 3,355,688 + RR42_RS35225 0.26 +0.2 3,355,688 + RR42_RS35225 0.26 +0.2 3,355,811 + RR42_RS35225 0.33 -0.5 3,356,015 + RR42_RS35225 0.45 -0.5 3,356,015 + RR42_RS35225 0.45 -0.4 3,356,016 - RR42_RS35225 0.45 +0.3 3,356,016 - RR42_RS35225 0.45 -0.4 3,356,016 - RR42_RS35225 0.45 +0.1
Or see this region's nucleotide sequence