Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26240 and RR42_RS26245 are separated by 106 nucleotides RR42_RS26245 and RR42_RS26250 are separated by 26 nucleotides
RR42_RS26240: RR42_RS26240 - 4-aminobutyrate aminotransferase, at 1,244,565 to 1,245,827
_RS26240
RR42_RS26245: RR42_RS26245 - thiamine pyrophosphate-binding protein, at 1,245,934 to 1,247,661
_RS26245
RR42_RS26250: RR42_RS26250 - allantoate amidohydrolase, at 1,247,688 to 1,248,935
_RS26250
Position (kb) 1245
1246
1247
1248 Strain fitness (log2 ratio) -1
0
1
2 at 1245.024 kb on + strand, within RR42_RS26240 at 1245.024 kb on + strand, within RR42_RS26240 at 1245.025 kb on - strand, within RR42_RS26240 at 1245.025 kb on - strand, within RR42_RS26240 at 1245.078 kb on + strand, within RR42_RS26240 at 1245.330 kb on + strand, within RR42_RS26240 at 1245.331 kb on - strand, within RR42_RS26240 at 1245.331 kb on - strand, within RR42_RS26240 at 1245.732 kb on + strand at 1245.733 kb on - strand at 1245.733 kb on - strand at 1246.054 kb on + strand at 1246.054 kb on + strand at 1246.054 kb on + strand at 1246.055 kb on - strand at 1246.055 kb on - strand at 1246.055 kb on - strand at 1246.136 kb on - strand, within RR42_RS26245 at 1246.136 kb on - strand, within RR42_RS26245 at 1246.136 kb on - strand, within RR42_RS26245 at 1246.292 kb on - strand, within RR42_RS26245 at 1246.760 kb on + strand, within RR42_RS26245 at 1246.822 kb on + strand, within RR42_RS26245 at 1246.822 kb on + strand, within RR42_RS26245 at 1246.823 kb on - strand, within RR42_RS26245 at 1246.823 kb on - strand, within RR42_RS26245 at 1246.870 kb on + strand, within RR42_RS26245 at 1247.116 kb on - strand, within RR42_RS26245 at 1247.134 kb on + strand, within RR42_RS26245 at 1247.134 kb on + strand, within RR42_RS26245 at 1247.135 kb on - strand, within RR42_RS26245 at 1247.135 kb on - strand, within RR42_RS26245 at 1247.135 kb on - strand, within RR42_RS26245 at 1247.135 kb on - strand, within RR42_RS26245 at 1247.135 kb on - strand, within RR42_RS26245 at 1247.135 kb on - strand, within RR42_RS26245 at 1247.143 kb on + strand, within RR42_RS26245 at 1247.144 kb on - strand, within RR42_RS26245 at 1247.144 kb on - strand, within RR42_RS26245 at 1247.144 kb on - strand, within RR42_RS26245 at 1247.144 kb on - strand, within RR42_RS26245 at 1247.156 kb on - strand, within RR42_RS26245 at 1247.156 kb on - strand, within RR42_RS26245 at 1247.159 kb on - strand, within RR42_RS26245 at 1247.272 kb on + strand, within RR42_RS26245 at 1247.330 kb on - strand, within RR42_RS26245 at 1247.578 kb on + strand at 1247.578 kb on + strand at 1247.579 kb on - strand at 1247.659 kb on + strand at 1247.660 kb on - strand at 1247.660 kb on - strand at 1247.877 kb on - strand, within RR42_RS26250 at 1247.877 kb on - strand, within RR42_RS26250 at 1247.976 kb on + strand, within RR42_RS26250 at 1247.977 kb on - strand, within RR42_RS26250 at 1247.977 kb on - strand, within RR42_RS26250 at 1248.240 kb on + strand, within RR42_RS26250 at 1248.254 kb on + strand, within RR42_RS26250 at 1248.402 kb on + strand, within RR42_RS26250 at 1248.403 kb on - strand, within RR42_RS26250
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 1,245,024 + RR42_RS26240 0.36 +0.6 1,245,024 + RR42_RS26240 0.36 -0.6 1,245,025 - RR42_RS26240 0.36 +1.0 1,245,025 - RR42_RS26240 0.36 -0.1 1,245,078 + RR42_RS26240 0.41 -0.2 1,245,330 + RR42_RS26240 0.61 -1.0 1,245,331 - RR42_RS26240 0.61 +0.2 1,245,331 - RR42_RS26240 0.61 +0.9 1,245,732 + -0.3 1,245,733 - -1.0 1,245,733 - -0.2 1,246,054 + +0.4 1,246,054 + -0.5 1,246,054 + +0.4 1,246,055 - -0.7 1,246,055 - +0.1 1,246,055 - -1.6 1,246,136 - RR42_RS26245 0.12 +1.1 1,246,136 - RR42_RS26245 0.12 -0.3 1,246,136 - RR42_RS26245 0.12 +1.5 1,246,292 - RR42_RS26245 0.21 -0.7 1,246,760 + RR42_RS26245 0.48 -0.4 1,246,822 + RR42_RS26245 0.51 -0.2 1,246,822 + RR42_RS26245 0.51 -0.7 1,246,823 - RR42_RS26245 0.51 -0.5 1,246,823 - RR42_RS26245 0.51 -0.3 1,246,870 + RR42_RS26245 0.54 -1.4 1,247,116 - RR42_RS26245 0.68 -1.3 1,247,134 + RR42_RS26245 0.69 -0.7 1,247,134 + RR42_RS26245 0.69 -0.1 1,247,135 - RR42_RS26245 0.70 -0.2 1,247,135 - RR42_RS26245 0.70 +0.1 1,247,135 - RR42_RS26245 0.70 +0.0 1,247,135 - RR42_RS26245 0.70 -0.4 1,247,135 - RR42_RS26245 0.70 -0.4 1,247,135 - RR42_RS26245 0.70 +1.2 1,247,143 + RR42_RS26245 0.70 +1.4 1,247,144 - RR42_RS26245 0.70 +0.6 1,247,144 - RR42_RS26245 0.70 -0.0 1,247,144 - RR42_RS26245 0.70 -0.0 1,247,144 - RR42_RS26245 0.70 +0.0 1,247,156 - RR42_RS26245 0.71 +0.1 1,247,156 - RR42_RS26245 0.71 -1.3 1,247,159 - RR42_RS26245 0.71 +1.9 1,247,272 + RR42_RS26245 0.77 +0.8 1,247,330 - RR42_RS26245 0.81 +0.2 1,247,578 + -0.6 1,247,578 + +0.3 1,247,579 - +1.1 1,247,659 + +0.2 1,247,660 - +0.3 1,247,660 - +0.7 1,247,877 - RR42_RS26250 0.15 +0.0 1,247,877 - RR42_RS26250 0.15 +0.1 1,247,976 + RR42_RS26250 0.23 -0.2 1,247,977 - RR42_RS26250 0.23 +0.0 1,247,977 - RR42_RS26250 0.23 +0.2 1,248,240 + RR42_RS26250 0.44 +0.1 1,248,254 + RR42_RS26250 0.45 +0.3 1,248,402 + RR42_RS26250 0.57 -1.2 1,248,403 - RR42_RS26250 0.57 -1.5
Or see this region's nucleotide sequence