Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25805 and RR42_RS25810 are separated by 623 nucleotides RR42_RS25810 and RR42_RS25815 are separated by 1 nucleotides RR42_RS25815 and RR42_RS25820 are separated by 47 nucleotides RR42_RS25820 and RR42_RS25825 are separated by 55 nucleotides
RR42_RS25805: RR42_RS25805 - hypothetical protein, at 1,129,045 to 1,130,439
_RS25805
RR42_RS25810: RR42_RS25810 - DNA-binding protein, at 1,131,063 to 1,131,314
_RS25810
RR42_RS25815: RR42_RS25815 - hypothetical protein, at 1,131,316 to 1,132,113
_RS25815
RR42_RS25820: RR42_RS25820 - DNA polymerase III subunit epsilon, at 1,132,161 to 1,132,781
_RS25820
RR42_RS25825: RR42_RS25825 - histidine kinase, at 1,132,837 to 1,133,787
_RS25825
Position (kb) 1131
1132
1133 Strain fitness (log2 ratio) -1
0
1 at 1130.457 kb on + strand at 1130.460 kb on + strand at 1130.460 kb on + strand at 1130.460 kb on + strand at 1130.525 kb on - strand at 1130.525 kb on - strand at 1130.532 kb on + strand at 1130.532 kb on + strand at 1130.532 kb on + strand at 1130.532 kb on + strand at 1130.532 kb on + strand at 1130.533 kb on - strand at 1130.590 kb on + strand at 1130.591 kb on - strand at 1130.591 kb on - strand at 1130.591 kb on - strand at 1130.591 kb on - strand at 1130.716 kb on + strand at 1130.716 kb on + strand at 1130.736 kb on + strand at 1130.737 kb on - strand at 1130.824 kb on + strand at 1130.824 kb on + strand at 1130.862 kb on + strand at 1130.868 kb on + strand at 1131.064 kb on + strand at 1131.065 kb on - strand at 1131.065 kb on - strand at 1131.173 kb on + strand, within RR42_RS25810 at 1131.174 kb on - strand, within RR42_RS25810 at 1131.175 kb on + strand, within RR42_RS25810 at 1131.175 kb on + strand, within RR42_RS25810 at 1131.175 kb on + strand, within RR42_RS25810 at 1131.175 kb on + strand, within RR42_RS25810 at 1131.176 kb on - strand, within RR42_RS25810 at 1131.176 kb on - strand, within RR42_RS25810 at 1131.176 kb on - strand, within RR42_RS25810 at 1131.306 kb on + strand at 1131.306 kb on + strand at 1131.307 kb on - strand at 1131.377 kb on + strand at 1131.377 kb on + strand at 1131.614 kb on + strand, within RR42_RS25815 at 1131.614 kb on + strand, within RR42_RS25815 at 1131.775 kb on + strand, within RR42_RS25815 at 1131.775 kb on + strand, within RR42_RS25815 at 1131.775 kb on + strand, within RR42_RS25815 at 1131.839 kb on + strand, within RR42_RS25815 at 1131.839 kb on + strand, within RR42_RS25815 at 1132.246 kb on + strand, within RR42_RS25820 at 1132.247 kb on - strand, within RR42_RS25820 at 1132.267 kb on + strand, within RR42_RS25820 at 1132.267 kb on + strand, within RR42_RS25820 at 1132.267 kb on + strand, within RR42_RS25820 at 1132.370 kb on + strand, within RR42_RS25820 at 1132.370 kb on + strand, within RR42_RS25820 at 1132.371 kb on - strand, within RR42_RS25820 at 1132.371 kb on - strand, within RR42_RS25820
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 1,130,457 + -0.3 1,130,460 + +1.3 1,130,460 + -0.8 1,130,460 + +0.7 1,130,525 - +0.7 1,130,525 - +0.7 1,130,532 + +0.5 1,130,532 + -0.1 1,130,532 + -1.1 1,130,532 + -0.4 1,130,532 + +0.6 1,130,533 - -0.9 1,130,590 + -0.2 1,130,591 - +0.1 1,130,591 - -0.7 1,130,591 - -0.4 1,130,591 - -0.8 1,130,716 + +0.3 1,130,716 + +0.4 1,130,736 + +0.8 1,130,737 - -0.9 1,130,824 + +0.2 1,130,824 + -0.6 1,130,862 + +0.5 1,130,868 + +0.1 1,131,064 + -0.1 1,131,065 - +0.1 1,131,065 - +0.6 1,131,173 + RR42_RS25810 0.44 -0.8 1,131,174 - RR42_RS25810 0.44 -0.9 1,131,175 + RR42_RS25810 0.44 -1.5 1,131,175 + RR42_RS25810 0.44 -1.3 1,131,175 + RR42_RS25810 0.44 -0.4 1,131,175 + RR42_RS25810 0.44 +1.3 1,131,176 - RR42_RS25810 0.45 -0.6 1,131,176 - RR42_RS25810 0.45 -0.2 1,131,176 - RR42_RS25810 0.45 -0.0 1,131,306 + -0.1 1,131,306 + +1.1 1,131,307 - -0.7 1,131,377 + -0.2 1,131,377 + +0.3 1,131,614 + RR42_RS25815 0.37 -0.8 1,131,614 + RR42_RS25815 0.37 -0.3 1,131,775 + RR42_RS25815 0.58 +0.6 1,131,775 + RR42_RS25815 0.58 -0.2 1,131,775 + RR42_RS25815 0.58 +1.5 1,131,839 + RR42_RS25815 0.66 -1.0 1,131,839 + RR42_RS25815 0.66 -0.8 1,132,246 + RR42_RS25820 0.14 -1.2 1,132,247 - RR42_RS25820 0.14 +0.4 1,132,267 + RR42_RS25820 0.17 +0.9 1,132,267 + RR42_RS25820 0.17 +0.0 1,132,267 + RR42_RS25820 0.17 +0.1 1,132,370 + RR42_RS25820 0.34 +0.2 1,132,370 + RR42_RS25820 0.34 +0.1 1,132,371 - RR42_RS25820 0.34 -0.5 1,132,371 - RR42_RS25820 0.34 -0.9
Or see this region's nucleotide sequence