Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24770 and RR42_RS24775 are separated by 142 nucleotides RR42_RS24775 and RR42_RS24780 are separated by 160 nucleotides
RR42_RS24770: RR42_RS24770 - NADH:flavin oxidoreductase, at 895,402 to 896,562
_RS24770
RR42_RS24775: RR42_RS24775 - transcriptional regulator, at 896,705 to 897,655
_RS24775
RR42_RS24780: RR42_RS24780 - alpha/beta hydrolase, at 897,816 to 898,736
_RS24780
Position (kb) 896
897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 895.779 kb on - strand, within RR42_RS24770 at 895.779 kb on - strand, within RR42_RS24770 at 896.041 kb on + strand, within RR42_RS24770 at 896.368 kb on + strand, within RR42_RS24770 at 896.420 kb on + strand, within RR42_RS24770 at 896.424 kb on - strand, within RR42_RS24770 at 896.564 kb on + strand at 896.564 kb on + strand at 896.565 kb on - strand at 896.657 kb on + strand at 896.657 kb on - strand at 896.827 kb on - strand, within RR42_RS24775 at 896.827 kb on - strand, within RR42_RS24775 at 896.830 kb on + strand, within RR42_RS24775 at 896.830 kb on + strand, within RR42_RS24775 at 896.830 kb on + strand, within RR42_RS24775 at 896.830 kb on + strand, within RR42_RS24775 at 896.831 kb on - strand, within RR42_RS24775 at 896.831 kb on - strand, within RR42_RS24775 at 896.832 kb on + strand, within RR42_RS24775 at 896.832 kb on + strand, within RR42_RS24775 at 896.832 kb on + strand, within RR42_RS24775 at 896.833 kb on - strand, within RR42_RS24775 at 896.833 kb on - strand, within RR42_RS24775 at 896.917 kb on + strand, within RR42_RS24775 at 896.943 kb on - strand, within RR42_RS24775 at 896.943 kb on - strand, within RR42_RS24775 at 896.977 kb on + strand, within RR42_RS24775 at 897.136 kb on - strand, within RR42_RS24775 at 897.358 kb on + strand, within RR42_RS24775 at 897.358 kb on + strand, within RR42_RS24775 at 897.359 kb on - strand, within RR42_RS24775 at 897.359 kb on - strand, within RR42_RS24775 at 897.501 kb on + strand, within RR42_RS24775 at 897.502 kb on - strand, within RR42_RS24775 at 897.675 kb on + strand at 897.702 kb on + strand at 897.706 kb on + strand at 897.706 kb on + strand at 897.720 kb on + strand at 897.729 kb on + strand at 897.729 kb on + strand at 897.729 kb on + strand at 897.730 kb on - strand at 897.730 kb on - strand at 897.730 kb on - strand at 897.730 kb on - strand at 897.843 kb on + strand at 897.843 kb on + strand at 897.844 kb on - strand at 897.844 kb on - strand at 897.868 kb on - strand at 898.098 kb on + strand, within RR42_RS24780 at 898.099 kb on - strand, within RR42_RS24780 at 898.116 kb on + strand, within RR42_RS24780 at 898.218 kb on - strand, within RR42_RS24780 at 898.218 kb on - strand, within RR42_RS24780 at 898.233 kb on + strand, within RR42_RS24780 at 898.233 kb on + strand, within RR42_RS24780 at 898.234 kb on - strand, within RR42_RS24780 at 898.402 kb on + strand, within RR42_RS24780 at 898.403 kb on - strand, within RR42_RS24780
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 895,779 - RR42_RS24770 0.32 -0.3 895,779 - RR42_RS24770 0.32 +0.3 896,041 + RR42_RS24770 0.55 -0.7 896,368 + RR42_RS24770 0.83 -0.6 896,420 + RR42_RS24770 0.88 -0.1 896,424 - RR42_RS24770 0.88 +0.1 896,564 + -0.1 896,564 + +0.7 896,565 - +0.2 896,657 + -0.7 896,657 - +0.4 896,827 - RR42_RS24775 0.13 -0.4 896,827 - RR42_RS24775 0.13 -0.2 896,830 + RR42_RS24775 0.13 -0.6 896,830 + RR42_RS24775 0.13 -0.2 896,830 + RR42_RS24775 0.13 -3.0 896,830 + RR42_RS24775 0.13 +0.4 896,831 - RR42_RS24775 0.13 -0.7 896,831 - RR42_RS24775 0.13 +0.0 896,832 + RR42_RS24775 0.13 +0.4 896,832 + RR42_RS24775 0.13 -0.0 896,832 + RR42_RS24775 0.13 -1.3 896,833 - RR42_RS24775 0.13 +0.0 896,833 - RR42_RS24775 0.13 +0.3 896,917 + RR42_RS24775 0.22 +0.2 896,943 - RR42_RS24775 0.25 +0.5 896,943 - RR42_RS24775 0.25 -0.0 896,977 + RR42_RS24775 0.29 -0.3 897,136 - RR42_RS24775 0.45 +0.2 897,358 + RR42_RS24775 0.69 -0.9 897,358 + RR42_RS24775 0.69 +0.1 897,359 - RR42_RS24775 0.69 -0.8 897,359 - RR42_RS24775 0.69 -0.3 897,501 + RR42_RS24775 0.84 +0.2 897,502 - RR42_RS24775 0.84 +0.8 897,675 + -0.3 897,702 + -0.5 897,706 + +1.0 897,706 + +0.3 897,720 + +0.7 897,729 + -0.3 897,729 + -0.5 897,729 + +1.3 897,730 - +0.5 897,730 - -0.5 897,730 - -0.7 897,730 - -0.6 897,843 + -0.1 897,843 + -0.5 897,844 - +0.7 897,844 - +0.4 897,868 - -0.2 898,098 + RR42_RS24780 0.31 -1.8 898,099 - RR42_RS24780 0.31 +0.2 898,116 + RR42_RS24780 0.33 +0.2 898,218 - RR42_RS24780 0.44 -0.4 898,218 - RR42_RS24780 0.44 -0.2 898,233 + RR42_RS24780 0.45 +0.7 898,233 + RR42_RS24780 0.45 +0.3 898,234 - RR42_RS24780 0.45 -0.2 898,402 + RR42_RS24780 0.64 -0.5 898,403 - RR42_RS24780 0.64 +0.3
Or see this region's nucleotide sequence