Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24755

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24745 and RR42_RS24750 are separated by 251 nucleotidesRR42_RS24750 and RR42_RS24755 are separated by 140 nucleotidesRR42_RS24755 and RR42_RS24760 are separated by 217 nucleotides RR42_RS24745: RR42_RS24745 - hypothetical protein, at 888,667 to 889,308 _RS24745 RR42_RS24750: RR42_RS24750 - LysR family transcriptional regulator, at 889,560 to 889,904 _RS24750 RR42_RS24755: RR42_RS24755 - ATP synthase subunit beta, at 890,045 to 893,467 _RS24755 RR42_RS24760: RR42_RS24760 - hypothetical protein, at 893,685 to 893,993 _RS24760 Position (kb) 890 891 892 893 894Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 889.134 kb on - strand, within RR42_RS24745at 889.137 kb on - strand, within RR42_RS24745at 889.137 kb on - strand, within RR42_RS24745at 889.137 kb on - strand, within RR42_RS24745at 889.169 kb on + strand, within RR42_RS24745at 889.170 kb on - strand, within RR42_RS24745at 889.170 kb on - strand, within RR42_RS24745at 889.170 kb on - strand, within RR42_RS24745at 889.170 kb on - strand, within RR42_RS24745at 889.366 kb on - strandat 889.373 kb on + strandat 889.373 kb on + strandat 889.446 kb on + strandat 889.446 kb on + strandat 889.447 kb on - strandat 889.459 kb on + strandat 889.470 kb on + strandat 889.521 kb on + strandat 889.521 kb on + strandat 889.521 kb on + strandat 889.521 kb on + strandat 889.572 kb on + strandat 889.572 kb on + strandat 889.572 kb on + strandat 889.572 kb on + strandat 889.573 kb on - strandat 889.650 kb on + strand, within RR42_RS24750at 889.715 kb on - strand, within RR42_RS24750at 889.715 kb on - strand, within RR42_RS24750at 889.792 kb on - strand, within RR42_RS24750at 889.847 kb on - strand, within RR42_RS24750at 889.847 kb on - strand, within RR42_RS24750at 889.936 kb on + strandat 890.007 kb on - strandat 890.007 kb on - strandat 890.056 kb on + strandat 890.057 kb on - strandat 890.057 kb on - strandat 890.226 kb on + strandat 890.243 kb on + strandat 890.244 kb on - strandat 890.343 kb on + strandat 890.454 kb on - strand, within RR42_RS24755at 890.454 kb on - strand, within RR42_RS24755at 890.463 kb on - strand, within RR42_RS24755at 890.463 kb on - strand, within RR42_RS24755at 890.642 kb on - strand, within RR42_RS24755at 890.759 kb on - strand, within RR42_RS24755at 890.759 kb on - strand, within RR42_RS24755at 890.861 kb on + strand, within RR42_RS24755at 890.861 kb on + strand, within RR42_RS24755at 890.861 kb on + strand, within RR42_RS24755at 890.862 kb on - strand, within RR42_RS24755at 890.862 kb on - strand, within RR42_RS24755at 890.862 kb on - strand, within RR42_RS24755at 891.128 kb on + strand, within RR42_RS24755at 891.128 kb on + strand, within RR42_RS24755at 891.158 kb on + strand, within RR42_RS24755at 891.159 kb on - strand, within RR42_RS24755at 891.267 kb on - strand, within RR42_RS24755at 891.494 kb on + strand, within RR42_RS24755at 891.506 kb on + strand, within RR42_RS24755at 891.506 kb on + strand, within RR42_RS24755at 891.537 kb on - strand, within RR42_RS24755at 891.537 kb on - strand, within RR42_RS24755at 891.732 kb on - strand, within RR42_RS24755at 891.778 kb on - strand, within RR42_RS24755at 891.800 kb on - strand, within RR42_RS24755at 891.800 kb on - strand, within RR42_RS24755at 891.912 kb on + strand, within RR42_RS24755at 891.953 kb on + strand, within RR42_RS24755at 891.954 kb on - strand, within RR42_RS24755at 891.954 kb on - strand, within RR42_RS24755at 891.954 kb on - strand, within RR42_RS24755at 891.954 kb on - strand, within RR42_RS24755at 891.954 kb on - strand, within RR42_RS24755at 891.983 kb on + strand, within RR42_RS24755at 891.984 kb on - strand, within RR42_RS24755at 891.984 kb on - strand, within RR42_RS24755at 891.984 kb on - strand, within RR42_RS24755at 892.045 kb on + strand, within RR42_RS24755at 892.046 kb on - strand, within RR42_RS24755at 892.046 kb on - strand, within RR42_RS24755at 892.109 kb on + strand, within RR42_RS24755at 892.170 kb on - strand, within RR42_RS24755at 892.370 kb on + strand, within RR42_RS24755at 892.371 kb on - strand, within RR42_RS24755at 892.371 kb on - strand, within RR42_RS24755at 892.371 kb on - strand, within RR42_RS24755at 892.371 kb on - strand, within RR42_RS24755at 892.440 kb on + strand, within RR42_RS24755at 892.441 kb on - strand, within RR42_RS24755at 892.441 kb on - strand, within RR42_RS24755at 892.441 kb on - strand, within RR42_RS24755at 892.441 kb on - strand, within RR42_RS24755at 892.451 kb on + strand, within RR42_RS24755at 892.452 kb on - strand, within RR42_RS24755at 892.609 kb on + strand, within RR42_RS24755at 892.609 kb on + strand, within RR42_RS24755at 892.609 kb on + strand, within RR42_RS24755at 892.652 kb on + strand, within RR42_RS24755at 892.653 kb on - strand, within RR42_RS24755at 892.665 kb on + strand, within RR42_RS24755at 892.922 kb on + strand, within RR42_RS24755at 892.923 kb on - strand, within RR42_RS24755at 892.972 kb on + strand, within RR42_RS24755at 892.973 kb on - strand, within RR42_RS24755at 893.078 kb on + strand, within RR42_RS24755at 893.079 kb on - strand, within RR42_RS24755at 893.256 kb on + strandat 893.257 kb on - strandat 893.323 kb on - strandat 893.634 kb on - strandat 893.671 kb on + strandat 893.757 kb on - strand, within RR42_RS24760at 894.068 kb on - strandat 894.070 kb on + strandat 894.409 kb on + strandat 894.410 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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889,134 - RR42_RS24745 0.73 +0.1
889,137 - RR42_RS24745 0.73 +0.0
889,137 - RR42_RS24745 0.73 -0.5
889,137 - RR42_RS24745 0.73 +0.3
889,169 + RR42_RS24745 0.78 -0.2
889,170 - RR42_RS24745 0.78 +0.3
889,170 - RR42_RS24745 0.78 +0.0
889,170 - RR42_RS24745 0.78 +0.1
889,170 - RR42_RS24745 0.78 -0.4
889,366 - -0.3
889,373 + +0.0
889,373 + +0.1
889,446 + +0.7
889,446 + -0.5
889,447 - -0.0
889,459 + -0.2
889,470 + -0.3
889,521 + -0.4
889,521 + -0.0
889,521 + -1.7
889,521 + +0.7
889,572 + +0.4
889,572 + +0.7
889,572 + -1.0
889,572 + -1.0
889,573 - -0.1
889,650 + RR42_RS24750 0.26 -3.2
889,715 - RR42_RS24750 0.45 -0.9
889,715 - RR42_RS24750 0.45 -0.9
889,792 - RR42_RS24750 0.67 +1.6
889,847 - RR42_RS24750 0.83 -1.4
889,847 - RR42_RS24750 0.83 -0.7
889,936 + -0.6
890,007 - +0.2
890,007 - +0.3
890,056 + -3.7
890,057 - +0.9
890,057 - +1.3
890,226 + +0.2
890,243 + -0.4
890,244 - -0.0
890,343 + -0.1
890,454 - RR42_RS24755 0.12 -0.2
890,454 - RR42_RS24755 0.12 +0.5
890,463 - RR42_RS24755 0.12 +0.8
890,463 - RR42_RS24755 0.12 +3.1
890,642 - RR42_RS24755 0.17 +0.5
890,759 - RR42_RS24755 0.21 +0.6
890,759 - RR42_RS24755 0.21 -0.6
890,861 + RR42_RS24755 0.24 +0.5
890,861 + RR42_RS24755 0.24 +0.5
890,861 + RR42_RS24755 0.24 -0.9
890,862 - RR42_RS24755 0.24 -0.3
890,862 - RR42_RS24755 0.24 -0.0
890,862 - RR42_RS24755 0.24 +0.3
891,128 + RR42_RS24755 0.32 +0.6
891,128 + RR42_RS24755 0.32 +0.1
891,158 + RR42_RS24755 0.33 -0.9
891,159 - RR42_RS24755 0.33 -0.7
891,267 - RR42_RS24755 0.36 +0.4
891,494 + RR42_RS24755 0.42 -0.7
891,506 + RR42_RS24755 0.43 -0.6
891,506 + RR42_RS24755 0.43 +0.4
891,537 - RR42_RS24755 0.44 -0.6
891,537 - RR42_RS24755 0.44 -0.4
891,732 - RR42_RS24755 0.49 +0.3
891,778 - RR42_RS24755 0.51 -1.8
891,800 - RR42_RS24755 0.51 -0.2
891,800 - RR42_RS24755 0.51 -0.2
891,912 + RR42_RS24755 0.55 +0.5
891,953 + RR42_RS24755 0.56 -0.7
891,954 - RR42_RS24755 0.56 -1.3
891,954 - RR42_RS24755 0.56 +0.1
891,954 - RR42_RS24755 0.56 -0.9
891,954 - RR42_RS24755 0.56 -0.2
891,954 - RR42_RS24755 0.56 -1.5
891,983 + RR42_RS24755 0.57 +0.1
891,984 - RR42_RS24755 0.57 -0.1
891,984 - RR42_RS24755 0.57 +0.2
891,984 - RR42_RS24755 0.57 -0.7
892,045 + RR42_RS24755 0.58 -0.3
892,046 - RR42_RS24755 0.58 +0.9
892,046 - RR42_RS24755 0.58 -0.7
892,109 + RR42_RS24755 0.60 -0.4
892,170 - RR42_RS24755 0.62 -0.2
892,370 + RR42_RS24755 0.68 -0.6
892,371 - RR42_RS24755 0.68 +0.3
892,371 - RR42_RS24755 0.68 -0.9
892,371 - RR42_RS24755 0.68 +0.3
892,371 - RR42_RS24755 0.68 -0.4
892,440 + RR42_RS24755 0.70 +0.7
892,441 - RR42_RS24755 0.70 -0.5
892,441 - RR42_RS24755 0.70 +0.6
892,441 - RR42_RS24755 0.70 +0.4
892,441 - RR42_RS24755 0.70 +0.1
892,451 + RR42_RS24755 0.70 +0.9
892,452 - RR42_RS24755 0.70 -0.7
892,609 + RR42_RS24755 0.75 +0.2
892,609 + RR42_RS24755 0.75 +0.1
892,609 + RR42_RS24755 0.75 +0.0
892,652 + RR42_RS24755 0.76 +0.1
892,653 - RR42_RS24755 0.76 +0.7
892,665 + RR42_RS24755 0.77 +0.4
892,922 + RR42_RS24755 0.84 -1.0
892,923 - RR42_RS24755 0.84 -0.4
892,972 + RR42_RS24755 0.86 +0.7
892,973 - RR42_RS24755 0.86 +0.1
893,078 + RR42_RS24755 0.89 +0.1
893,079 - RR42_RS24755 0.89 +0.2
893,256 + +0.8
893,257 - +0.5
893,323 - +0.3
893,634 - -1.1
893,671 + +0.6
893,757 - RR42_RS24760 0.23 +1.1
894,068 - +0.5
894,070 + +0.2
894,409 + -0.2
894,410 - +0.4

Or see this region's nucleotide sequence