Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22880 and RR42_RS22885 are separated by 1 nucleotides RR42_RS22885 and RR42_RS22890 are separated by 129 nucleotides RR42_RS22890 and RR42_RS22895 are separated by 287 nucleotides
RR42_RS22880: RR42_RS22880 - ABC transporter permease, at 465,033 to 465,938
_RS22880
RR42_RS22885: RR42_RS22885 - sugar ABC transporter permease, at 465,940 to 466,806
_RS22885
RR42_RS22890: RR42_RS22890 - TetR family transcriptional regulator, at 466,936 to 467,667
_RS22890
RR42_RS22895: RR42_RS22895 - 5-oxoprolinase, at 467,955 to 470,084
_RS22895
Position (kb) 466
467
468 Strain fitness (log2 ratio) -2
-1
0
1
2 at 466.048 kb on + strand, within RR42_RS22885 at 466.049 kb on - strand, within RR42_RS22885 at 466.049 kb on - strand, within RR42_RS22885 at 466.049 kb on - strand, within RR42_RS22885 at 466.049 kb on - strand, within RR42_RS22885 at 466.171 kb on + strand, within RR42_RS22885 at 466.171 kb on + strand, within RR42_RS22885 at 466.171 kb on + strand, within RR42_RS22885 at 466.316 kb on - strand, within RR42_RS22885 at 466.408 kb on + strand, within RR42_RS22885 at 466.569 kb on - strand, within RR42_RS22885 at 466.574 kb on + strand, within RR42_RS22885 at 466.627 kb on - strand, within RR42_RS22885 at 466.627 kb on - strand, within RR42_RS22885 at 466.627 kb on - strand, within RR42_RS22885 at 466.690 kb on + strand, within RR42_RS22885 at 466.691 kb on - strand, within RR42_RS22885 at 466.751 kb on - strand at 466.786 kb on - strand at 467.033 kb on + strand, within RR42_RS22890 at 467.033 kb on + strand, within RR42_RS22890 at 467.034 kb on - strand, within RR42_RS22890 at 467.124 kb on - strand, within RR42_RS22890 at 467.141 kb on + strand, within RR42_RS22890 at 467.142 kb on - strand, within RR42_RS22890 at 467.166 kb on + strand, within RR42_RS22890 at 467.166 kb on + strand, within RR42_RS22890 at 467.166 kb on + strand, within RR42_RS22890 at 467.166 kb on + strand, within RR42_RS22890 at 467.170 kb on + strand, within RR42_RS22890 at 467.171 kb on - strand, within RR42_RS22890 at 467.171 kb on - strand, within RR42_RS22890 at 467.495 kb on + strand, within RR42_RS22890 at 467.495 kb on + strand, within RR42_RS22890 at 467.502 kb on - strand, within RR42_RS22890 at 467.752 kb on + strand at 468.372 kb on - strand, within RR42_RS22895 at 468.400 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.470 kb on + strand, within RR42_RS22895 at 468.470 kb on + strand, within RR42_RS22895 at 468.471 kb on - strand, within RR42_RS22895 at 468.471 kb on - strand, within RR42_RS22895 at 468.471 kb on - strand, within RR42_RS22895 at 468.574 kb on - strand, within RR42_RS22895 at 468.606 kb on + strand, within RR42_RS22895 at 468.606 kb on + strand, within RR42_RS22895 at 468.607 kb on - strand, within RR42_RS22895 at 468.630 kb on + strand, within RR42_RS22895
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 466,048 + RR42_RS22885 0.12 +0.1 466,049 - RR42_RS22885 0.13 +0.2 466,049 - RR42_RS22885 0.13 -0.6 466,049 - RR42_RS22885 0.13 +1.5 466,049 - RR42_RS22885 0.13 +0.7 466,171 + RR42_RS22885 0.27 +0.3 466,171 + RR42_RS22885 0.27 +0.5 466,171 + RR42_RS22885 0.27 +0.1 466,316 - RR42_RS22885 0.43 +0.4 466,408 + RR42_RS22885 0.54 +0.2 466,569 - RR42_RS22885 0.73 +0.2 466,574 + RR42_RS22885 0.73 -0.2 466,627 - RR42_RS22885 0.79 +0.2 466,627 - RR42_RS22885 0.79 +0.7 466,627 - RR42_RS22885 0.79 -0.8 466,690 + RR42_RS22885 0.87 -0.3 466,691 - RR42_RS22885 0.87 +0.8 466,751 - -0.1 466,786 - +0.4 467,033 + RR42_RS22890 0.13 -1.6 467,033 + RR42_RS22890 0.13 +2.0 467,034 - RR42_RS22890 0.13 +0.0 467,124 - RR42_RS22890 0.26 -2.2 467,141 + RR42_RS22890 0.28 -0.9 467,142 - RR42_RS22890 0.28 -1.4 467,166 + RR42_RS22890 0.31 -0.6 467,166 + RR42_RS22890 0.31 -0.6 467,166 + RR42_RS22890 0.31 -0.6 467,166 + RR42_RS22890 0.31 -2.5 467,170 + RR42_RS22890 0.32 -1.6 467,171 - RR42_RS22890 0.32 -0.9 467,171 - RR42_RS22890 0.32 -0.3 467,495 + RR42_RS22890 0.76 -1.8 467,495 + RR42_RS22890 0.76 -1.1 467,502 - RR42_RS22890 0.77 -0.3 467,752 + +0.3 468,372 - RR42_RS22895 0.20 -0.2 468,400 + RR42_RS22895 0.21 -1.2 468,468 + RR42_RS22895 0.24 +0.2 468,468 + RR42_RS22895 0.24 +1.9 468,468 + RR42_RS22895 0.24 -0.4 468,468 + RR42_RS22895 0.24 +0.5 468,468 + RR42_RS22895 0.24 +0.9 468,470 + RR42_RS22895 0.24 +0.5 468,470 + RR42_RS22895 0.24 -0.4 468,471 - RR42_RS22895 0.24 +0.3 468,471 - RR42_RS22895 0.24 +0.2 468,471 - RR42_RS22895 0.24 -0.9 468,574 - RR42_RS22895 0.29 -1.5 468,606 + RR42_RS22895 0.31 +1.4 468,606 + RR42_RS22895 0.31 -1.2 468,607 - RR42_RS22895 0.31 -0.5 468,630 + RR42_RS22895 0.32 -0.4
Or see this region's nucleotide sequence