Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22480

Experiment: D-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS22470 and RR42_RS22475 are separated by 101 nucleotidesRR42_RS22475 and RR42_RS22480 are separated by 35 nucleotidesRR42_RS22480 and RR42_RS22485 are separated by 54 nucleotides RR42_RS22470: RR42_RS22470 - MFS transporter, at 378,168 to 379,493 _RS22470 RR42_RS22475: RR42_RS22475 - hypothetical protein, at 379,595 to 379,810 _RS22475 RR42_RS22480: RR42_RS22480 - FAD-dependent oxidoreductase, at 379,846 to 381,579 _RS22480 RR42_RS22485: RR42_RS22485 - MBL fold metallo-hydrolase, at 381,634 to 382,593 _RS22485 Position (kb) 379 380 381 382Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 378.934 kb on + strand, within RR42_RS22470at 378.935 kb on - strand, within RR42_RS22470at 379.073 kb on - strand, within RR42_RS22470at 379.073 kb on - strand, within RR42_RS22470at 379.073 kb on - strand, within RR42_RS22470at 379.133 kb on - strand, within RR42_RS22470at 379.133 kb on - strand, within RR42_RS22470at 379.274 kb on - strand, within RR42_RS22470at 379.274 kb on - strand, within RR42_RS22470at 379.274 kb on - strand, within RR42_RS22470at 379.274 kb on - strand, within RR42_RS22470at 379.298 kb on - strand, within RR42_RS22470at 379.376 kb on + strandat 379.377 kb on - strandat 379.381 kb on + strandat 379.381 kb on + strandat 379.382 kb on - strandat 379.382 kb on - strandat 379.382 kb on - strandat 379.998 kb on - strandat 380.022 kb on - strand, within RR42_RS22480at 380.203 kb on + strand, within RR42_RS22480at 380.204 kb on - strand, within RR42_RS22480at 380.356 kb on - strand, within RR42_RS22480at 380.356 kb on - strand, within RR42_RS22480at 380.493 kb on - strand, within RR42_RS22480at 380.510 kb on + strand, within RR42_RS22480at 380.511 kb on - strand, within RR42_RS22480at 380.511 kb on - strand, within RR42_RS22480at 380.698 kb on - strand, within RR42_RS22480at 380.698 kb on - strand, within RR42_RS22480at 380.698 kb on - strand, within RR42_RS22480at 380.699 kb on + strand, within RR42_RS22480at 381.047 kb on + strand, within RR42_RS22480at 381.048 kb on - strand, within RR42_RS22480at 381.194 kb on + strand, within RR42_RS22480at 381.194 kb on + strand, within RR42_RS22480at 381.194 kb on + strand, within RR42_RS22480at 381.194 kb on + strand, within RR42_RS22480at 381.194 kb on + strand, within RR42_RS22480at 381.194 kb on + strand, within RR42_RS22480at 381.195 kb on - strand, within RR42_RS22480at 381.195 kb on - strand, within RR42_RS22480at 381.195 kb on - strand, within RR42_RS22480at 381.197 kb on + strand, within RR42_RS22480at 381.197 kb on + strand, within RR42_RS22480at 381.198 kb on - strand, within RR42_RS22480at 381.260 kb on + strand, within RR42_RS22480at 381.260 kb on + strand, within RR42_RS22480at 381.261 kb on - strand, within RR42_RS22480at 381.617 kb on + strandat 381.752 kb on + strand, within RR42_RS22485at 381.752 kb on + strand, within RR42_RS22485at 381.752 kb on + strand, within RR42_RS22485at 381.753 kb on - strand, within RR42_RS22485at 381.753 kb on - strand, within RR42_RS22485at 381.753 kb on - strand, within RR42_RS22485at 381.753 kb on - strand, within RR42_RS22485at 381.753 kb on - strand, within RR42_RS22485at 381.882 kb on - strand, within RR42_RS22485at 382.028 kb on + strand, within RR42_RS22485at 382.029 kb on - strand, within RR42_RS22485at 382.029 kb on - strand, within RR42_RS22485at 382.277 kb on + strand, within RR42_RS22485at 382.278 kb on - strand, within RR42_RS22485at 382.322 kb on + strand, within RR42_RS22485at 382.323 kb on - strand, within RR42_RS22485at 382.356 kb on - strand, within RR42_RS22485at 382.373 kb on + strand, within RR42_RS22485at 382.374 kb on - strand, within RR42_RS22485at 382.512 kb on - strandat 382.517 kb on + strandat 382.517 kb on + strandat 382.518 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
remove
378,934 + RR42_RS22470 0.58 +0.2
378,935 - RR42_RS22470 0.58 -0.2
379,073 - RR42_RS22470 0.68 -1.1
379,073 - RR42_RS22470 0.68 -0.4
379,073 - RR42_RS22470 0.68 -1.4
379,133 - RR42_RS22470 0.73 +0.0
379,133 - RR42_RS22470 0.73 -1.3
379,274 - RR42_RS22470 0.83 -0.7
379,274 - RR42_RS22470 0.83 +1.6
379,274 - RR42_RS22470 0.83 -0.0
379,274 - RR42_RS22470 0.83 +0.5
379,298 - RR42_RS22470 0.85 -0.6
379,376 + +1.0
379,377 - -0.3
379,381 + +0.6
379,381 + +0.3
379,382 - +0.4
379,382 - +1.7
379,382 - -0.5
379,998 - -0.2
380,022 - RR42_RS22480 0.10 -0.6
380,203 + RR42_RS22480 0.21 -0.1
380,204 - RR42_RS22480 0.21 -0.8
380,356 - RR42_RS22480 0.29 -0.9
380,356 - RR42_RS22480 0.29 -0.1
380,493 - RR42_RS22480 0.37 -0.4
380,510 + RR42_RS22480 0.38 +1.2
380,511 - RR42_RS22480 0.38 +1.4
380,511 - RR42_RS22480 0.38 -0.4
380,698 - RR42_RS22480 0.49 +0.5
380,698 - RR42_RS22480 0.49 +2.0
380,698 - RR42_RS22480 0.49 +0.8
380,699 + RR42_RS22480 0.49 +0.7
381,047 + RR42_RS22480 0.69 -0.8
381,048 - RR42_RS22480 0.69 -0.0
381,194 + RR42_RS22480 0.78 +0.0
381,194 + RR42_RS22480 0.78 -0.8
381,194 + RR42_RS22480 0.78 +2.6
381,194 + RR42_RS22480 0.78 +0.0
381,194 + RR42_RS22480 0.78 +1.1
381,194 + RR42_RS22480 0.78 +0.2
381,195 - RR42_RS22480 0.78 -0.1
381,195 - RR42_RS22480 0.78 -0.1
381,195 - RR42_RS22480 0.78 +0.2
381,197 + RR42_RS22480 0.78 -0.2
381,197 + RR42_RS22480 0.78 +0.8
381,198 - RR42_RS22480 0.78 +0.3
381,260 + RR42_RS22480 0.82 -0.1
381,260 + RR42_RS22480 0.82 +0.4
381,261 - RR42_RS22480 0.82 -0.6
381,617 + -0.7
381,752 + RR42_RS22485 0.12 -0.1
381,752 + RR42_RS22485 0.12 -0.1
381,752 + RR42_RS22485 0.12 +0.1
381,753 - RR42_RS22485 0.12 +0.5
381,753 - RR42_RS22485 0.12 -1.4
381,753 - RR42_RS22485 0.12 +0.0
381,753 - RR42_RS22485 0.12 -3.7
381,753 - RR42_RS22485 0.12 -0.8
381,882 - RR42_RS22485 0.26 +0.2
382,028 + RR42_RS22485 0.41 +0.0
382,029 - RR42_RS22485 0.41 -0.1
382,029 - RR42_RS22485 0.41 -1.3
382,277 + RR42_RS22485 0.67 -0.2
382,278 - RR42_RS22485 0.67 -0.6
382,322 + RR42_RS22485 0.72 -0.8
382,323 - RR42_RS22485 0.72 +1.4
382,356 - RR42_RS22485 0.75 -3.1
382,373 + RR42_RS22485 0.77 +1.0
382,374 - RR42_RS22485 0.77 +0.0
382,512 - -0.3
382,517 + +0.8
382,517 + +0.8
382,518 - -0.4

Or see this region's nucleotide sequence