Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21675 and RR42_RS21680 are separated by 15 nucleotides RR42_RS21680 and RR42_RS21685 are separated by 90 nucleotides RR42_RS21685 and RR42_RS21690 are separated by 49 nucleotides RR42_RS21690 and RR42_RS21695 are separated by 14 nucleotides
RR42_RS21675: RR42_RS21675 - membrane protein, at 191,615 to 192,055
_RS21675
RR42_RS21680: RR42_RS21680 - hypothetical protein, at 192,071 to 192,748
_RS21680
RR42_RS21685: RR42_RS21685 - hypothetical protein, at 192,839 to 193,855
_RS21685
RR42_RS21690: RR42_RS21690 - acetyltransferase, at 193,905 to 194,432
_RS21690
RR42_RS21695: RR42_RS21695 - DNA-binding protein, at 194,447 to 195,034
_RS21695
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 191.873 kb on + strand, within RR42_RS21675 at 191.874 kb on - strand, within RR42_RS21675 at 191.874 kb on - strand, within RR42_RS21675 at 192.072 kb on + strand at 192.073 kb on - strand at 192.116 kb on + strand at 192.116 kb on + strand at 192.116 kb on + strand at 192.125 kb on + strand at 192.125 kb on + strand at 192.369 kb on + strand, within RR42_RS21680 at 192.370 kb on - strand, within RR42_RS21680 at 192.370 kb on - strand, within RR42_RS21680 at 192.510 kb on + strand, within RR42_RS21680 at 192.555 kb on + strand, within RR42_RS21680 at 192.556 kb on - strand, within RR42_RS21680 at 192.649 kb on - strand, within RR42_RS21680 at 192.649 kb on - strand, within RR42_RS21680 at 192.761 kb on - strand at 192.796 kb on + strand at 192.980 kb on - strand, within RR42_RS21685 at 192.980 kb on - strand, within RR42_RS21685 at 193.022 kb on + strand, within RR42_RS21685 at 193.263 kb on - strand, within RR42_RS21685 at 193.442 kb on + strand, within RR42_RS21685 at 193.918 kb on + strand at 194.005 kb on + strand, within RR42_RS21690 at 194.421 kb on - strand at 194.500 kb on - strand at 194.530 kb on - strand, within RR42_RS21695 at 194.607 kb on + strand, within RR42_RS21695 at 194.754 kb on + strand, within RR42_RS21695 at 194.754 kb on + strand, within RR42_RS21695 at 194.755 kb on - strand, within RR42_RS21695
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 191,873 + RR42_RS21675 0.59 -1.3 191,874 - RR42_RS21675 0.59 -0.9 191,874 - RR42_RS21675 0.59 +0.2 192,072 + +0.3 192,073 - +0.3 192,116 + -0.2 192,116 + +0.5 192,116 + -0.4 192,125 + -1.7 192,125 + -0.3 192,369 + RR42_RS21680 0.44 -0.1 192,370 - RR42_RS21680 0.44 +0.0 192,370 - RR42_RS21680 0.44 +0.3 192,510 + RR42_RS21680 0.65 +0.2 192,555 + RR42_RS21680 0.71 +0.1 192,556 - RR42_RS21680 0.72 -1.1 192,649 - RR42_RS21680 0.85 -0.0 192,649 - RR42_RS21680 0.85 -2.9 192,761 - -0.1 192,796 + -0.6 192,980 - RR42_RS21685 0.14 -2.1 192,980 - RR42_RS21685 0.14 +0.5 193,022 + RR42_RS21685 0.18 +0.5 193,263 - RR42_RS21685 0.42 -2.1 193,442 + RR42_RS21685 0.59 +0.1 193,918 + +1.0 194,005 + RR42_RS21690 0.19 -2.0 194,421 - -0.0 194,500 - +0.4 194,530 - RR42_RS21695 0.14 -0.0 194,607 + RR42_RS21695 0.27 +0.1 194,754 + RR42_RS21695 0.52 -0.3 194,754 + RR42_RS21695 0.52 +1.5 194,755 - RR42_RS21695 0.52 -0.3
Or see this region's nucleotide sequence