Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20515

Experiment: D-Alanine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (N)
4,443,017	+		RR42_RS20505	0.12	-0.2
4,443,021	-		RR42_RS20505	0.13	-2.0
4,443,059	+		RR42_RS20505	0.21	-0.6
4,443,059	+		RR42_RS20505	0.21	+0.4
4,443,060	-		RR42_RS20505	0.21	+0.4
4,443,348	+		RR42_RS20505	0.82	+0.4
4,443,348	+		RR42_RS20505	0.82	-0.2
4,443,348	+		RR42_RS20505	0.82	-0.4
4,443,348	+		RR42_RS20505	0.82	+1.2
4,443,349	-		RR42_RS20505	0.82	-0.3
4,443,349	-		RR42_RS20505	0.82	-0.0
4,443,349	-		RR42_RS20505	0.82	-0.8
4,443,354	+		RR42_RS20505	0.83	+0.3
4,443,471	+				-0.3
4,443,472	-				-0.5
4,443,472	-				+0.1
4,443,472	-				+0.3
4,443,472	-				-0.1
4,443,496	+				+0.8
4,443,497	-				+0.7
4,443,506	+				+0.3
4,443,506	+				+1.6
4,443,506	+				+0.5
4,443,507	-				+1.1
4,443,507	-				+0.4
4,443,507	-				-0.1
4,443,507	-				+0.0
4,443,507	-				-0.4
4,443,598	+				+0.7
4,443,599	-				+0.5
4,443,637	-				+1.4
4,443,728	+		RR42_RS20510	0.33	-2.9
4,443,728	+		RR42_RS20510	0.33	-0.3
4,443,728	+		RR42_RS20510	0.33	+0.6
4,443,728	+		RR42_RS20510	0.33	-0.4
4,443,729	-		RR42_RS20510	0.33	-0.4
4,443,729	-		RR42_RS20510	0.33	+0.8
4,443,776	+		RR42_RS20510	0.57	+0.1
4,443,776	+		RR42_RS20510	0.57	+1.4
4,443,776	+		RR42_RS20510	0.57	-0.5
4,443,776	+		RR42_RS20510	0.57	+0.1
4,443,776	+		RR42_RS20510	0.57	+1.4
4,443,776	+		RR42_RS20510	0.57	+0.9
4,443,776	+		RR42_RS20510	0.57	-0.1
4,443,777	-		RR42_RS20510	0.58	-1.8
4,443,777	-		RR42_RS20510	0.58	-1.5
4,443,777	-		RR42_RS20510	0.58	+0.1
4,443,777	-		RR42_RS20510	0.58	-0.7
4,443,786	-		RR42_RS20510	0.63	-1.0
4,443,827	+		RR42_RS20510	0.84	-1.6
4,443,828	-		RR42_RS20510	0.84	+0.0
4,443,828	-		RR42_RS20510	0.84	-1.6
4,444,040	+				+0.1
4,444,040	+				-0.2
4,444,041	-				-0.1
4,444,097	+				+0.8
4,444,097	+				-0.4
4,444,098	-				-0.9
4,444,098	-				+0.6
4,444,295	+		RR42_RS20515	0.17	-1.4
4,444,295	+		RR42_RS20515	0.17	+0.3
4,444,296	-		RR42_RS20515	0.17	-0.2
4,444,427	+		RR42_RS20515	0.23	-0.2
4,444,427	+		RR42_RS20515	0.23	-0.1
4,444,428	-		RR42_RS20515	0.24	+0.3
4,444,436	+		RR42_RS20515	0.24	-0.6
4,444,436	+		RR42_RS20515	0.24	+0.1
4,444,437	-		RR42_RS20515	0.24	+0.5
4,444,844	+		RR42_RS20515	0.44	+1.1
4,444,844	+		RR42_RS20515	0.44	+0.1
4,444,844	+		RR42_RS20515	0.44	+1.0
4,444,844	+		RR42_RS20515	0.44	+0.0
4,444,844	+		RR42_RS20515	0.44	-0.2
4,444,844	+		RR42_RS20515	0.44	+0.3
4,444,844	+		RR42_RS20515	0.44	+1.4
4,444,845	-		RR42_RS20515	0.44	+0.2
4,444,845	-		RR42_RS20515	0.44	+0.3
4,444,845	-		RR42_RS20515	0.44	+0.3
4,444,845	-		RR42_RS20515	0.44	+0.5
4,444,845	-		RR42_RS20515	0.44	+0.1
4,444,927	-		RR42_RS20515	0.48	+0.2
4,444,936	-		RR42_RS20515	0.48	+1.2
4,444,936	-		RR42_RS20515	0.48	+0.8
4,444,936	-		RR42_RS20515	0.48	+0.0
4,445,218	-		RR42_RS20515	0.62	-0.7
4,445,225	+		RR42_RS20515	0.62	+0.0
4,445,225	+		RR42_RS20515	0.62	+1.1
4,445,226	-		RR42_RS20515	0.62	+0.7
4,445,226	-		RR42_RS20515	0.62	+0.3
4,445,226	-		RR42_RS20515	0.62	+0.3
4,445,296	+		RR42_RS20515	0.65	+0.5
4,445,296	+		RR42_RS20515	0.65	+0.4
4,445,296	+		RR42_RS20515	0.65	+1.2
4,445,296	+		RR42_RS20515	0.65	+1.4
4,445,297	-		RR42_RS20515	0.65	-0.1
4,445,297	-		RR42_RS20515	0.65	+0.7
4,445,297	-		RR42_RS20515	0.65	+1.2
4,445,297	-		RR42_RS20515	0.65	+0.2
4,445,297	-		RR42_RS20515	0.65	+0.9
4,445,297	-		RR42_RS20515	0.65	+0.5
4,445,297	-		RR42_RS20515	0.65	-0.5
4,445,297	-		RR42_RS20515	0.65	+0.5
4,445,300	+		RR42_RS20515	0.66	+0.2
4,445,300	+		RR42_RS20515	0.66	+0.1
4,445,300	+		RR42_RS20515	0.66	+0.6
4,445,301	-		RR42_RS20515	0.66	+0.6
4,445,301	-		RR42_RS20515	0.66	+0.3
4,445,301	-		RR42_RS20515	0.66	+0.1
4,445,378	+		RR42_RS20515	0.69	+0.3
4,445,378	+		RR42_RS20515	0.69	+0.4
4,445,378	+		RR42_RS20515	0.69	+1.3
4,445,379	-		RR42_RS20515	0.69	+0.6
4,445,379	-		RR42_RS20515	0.69	+0.4
4,445,379	-		RR42_RS20515	0.69	+0.5
4,445,379	-		RR42_RS20515	0.69	+0.1
4,445,387	+		RR42_RS20515	0.70	+0.0
4,445,387	+		RR42_RS20515	0.70	+0.6
4,445,388	-		RR42_RS20515	0.70	+0.7
4,445,388	-		RR42_RS20515	0.70	+0.2
4,445,388	-		RR42_RS20515	0.70	+1.4
4,445,388	-		RR42_RS20515	0.70	+0.2
4,445,388	-		RR42_RS20515	0.70	+0.6
4,445,388	-		RR42_RS20515	0.70	+3.0
4,445,388	-		RR42_RS20515	0.70	+0.8
4,445,673	+		RR42_RS20515	0.84	+0.6
4,445,673	+		RR42_RS20515	0.84	+0.7
4,445,674	-		RR42_RS20515	0.84	+0.7
4,445,674	-		RR42_RS20515	0.84	-0.6
4,445,675	+		RR42_RS20515	0.84	+0.9
4,445,675	+		RR42_RS20515	0.84	+1.4
4,445,675	+		RR42_RS20515	0.84	+0.7
4,445,676	-		RR42_RS20515	0.84	+0.2
4,445,676	-		RR42_RS20515	0.84	+2.2
4,445,676	-		RR42_RS20515	0.84	+0.5
4,445,774	+		RR42_RS20515	0.88	-0.4
4,445,774	+		RR42_RS20515	0.88	+0.8
4,445,775	-		RR42_RS20515	0.89	+2.0
4,445,775	-		RR42_RS20515	0.89	+1.2
4,445,858	+				-0.0
4,445,858	+				+0.5
4,445,858	+				+0.3
4,445,859	-				-0.1
4,445,859	-				+0.8
4,445,859	-				-1.4
4,445,859	-				+0.6
4,445,861	+				+0.8
4,445,879	+				+1.0
4,445,880	-				-0.4
4,445,883	+				+0.4
4,445,883	+				-0.1
4,445,883	+				-0.1
4,445,884	-				+0.7
4,445,884	-				-0.8
4,445,884	-				+0.4
4,445,884	-				-0.1
4,445,884	-				+0.3
4,445,884	-				+0.4
4,445,884	-				+1.5
4,445,884	-				+1.8
4,445,884	-				+0.5
4,445,884	-				+0.9
4,446,251	+				-0.1
4,446,252	-				+0.7
4,446,252	-				+0.2
4,446,286	+				-2.0
4,446,286	+				+0.8
4,446,287	-				+0.7
4,446,287	-				+1.1
4,446,289	+				-1.2
4,446,289	+				+0.2
4,446,289	+				-0.2
4,446,289	+				+0.4
4,446,289	+				+2.3
4,446,289	+				+2.0
4,446,289	+				+1.0
4,446,290	-				-0.2
4,446,290	-				+0.1
4,446,290	-				-1.5
4,446,290	-				+0.0
4,446,326	-				-0.2
4,446,326	-				-0.3
4,446,343	-				+0.6
4,446,345	+				-1.4
4,446,486	-				+0.1
4,446,536	+				+1.7
4,446,569	+		RR42_RS20520	0.12	+0.1
4,446,570	-		RR42_RS20520	0.12	+3.4
4,446,570	-		RR42_RS20520	0.12	+1.2
4,446,570	-		RR42_RS20520	0.12	+1.2
4,446,570	-		RR42_RS20520	0.12	+1.2
4,446,570	-		RR42_RS20520	0.12	+0.3
4,446,573	+		RR42_RS20520	0.12	+0.5
4,446,573	+		RR42_RS20520	0.12	+0.5
4,446,573	+		RR42_RS20520	0.12	+0.4
4,446,573	+		RR42_RS20520	0.12	+1.4
4,446,574	-		RR42_RS20520	0.12	+0.1
4,446,574	-		RR42_RS20520	0.12	+1.5
4,446,671	+		RR42_RS20520	0.19	+0.5
4,446,686	+		RR42_RS20520	0.20	+1.0
4,446,687	-		RR42_RS20520	0.20	+1.0
4,446,687	-		RR42_RS20520	0.20	+1.4
4,446,698	+		RR42_RS20520	0.21	-0.2
4,446,698	+		RR42_RS20520	0.21	+0.2
4,446,698	+		RR42_RS20520	0.21	+1.9
4,446,698	+		RR42_RS20520	0.21	+0.7
4,446,699	-		RR42_RS20520	0.21	+0.2
4,446,699	-		RR42_RS20520	0.21	+0.6
4,446,699	-		RR42_RS20520	0.21	+1.0
4,446,699	-		RR42_RS20520	0.21	+0.7
4,446,699	-		RR42_RS20520	0.21	-0.4
4,446,699	-		RR42_RS20520	0.21	+0.0
4,446,759	+		RR42_RS20520	0.25	+1.4
4,446,759	+		RR42_RS20520	0.25	+0.4
4,446,759	+		RR42_RS20520	0.25	+0.0
4,446,759	+		RR42_RS20520	0.25	+0.4
4,446,759	+		RR42_RS20520	0.25	+0.3
4,446,759	+		RR42_RS20520	0.25	+1.3
4,446,760	-		RR42_RS20520	0.25	+0.7
4,446,760	-		RR42_RS20520	0.25	+0.7
4,446,760	-		RR42_RS20520	0.25	+0.3
4,446,760	-		RR42_RS20520	0.25	+1.1
4,446,760	-		RR42_RS20520	0.25	+0.8
4,446,760	-		RR42_RS20520	0.25	+0.9
4,446,760	-		RR42_RS20520	0.25	-0.7
4,446,760	-		RR42_RS20520	0.25	+0.8
4,446,760	-		RR42_RS20520	0.25	+1.3
4,446,760	-		RR42_RS20520	0.25	+0.5
4,446,760	-		RR42_RS20520	0.25	-0.1
4,446,760	-		RR42_RS20520	0.25	+2.4
4,446,842	+		RR42_RS20520	0.31	+0.8
4,446,842	+		RR42_RS20520	0.31	+0.8
4,446,842	+		RR42_RS20520	0.31	+1.1
4,446,842	+		RR42_RS20520	0.31	+0.2
4,446,842	+		RR42_RS20520	0.31	+2.7
4,446,843	-		RR42_RS20520	0.31	+0.2
4,446,843	-		RR42_RS20520	0.31	+2.1
4,446,843	-		RR42_RS20520	0.31	-0.1
4,446,844	+		RR42_RS20520	0.31	-0.8
4,446,844	+		RR42_RS20520	0.31	+0.2
4,446,844	+		RR42_RS20520	0.31	+1.3
4,446,844	+		RR42_RS20520	0.31	-0.1
4,446,844	+		RR42_RS20520	0.31	+0.6
4,446,844	+		RR42_RS20520	0.31	+1.4
4,446,844	+		RR42_RS20520	0.31	-0.5
4,446,844	+		RR42_RS20520	0.31	+1.0
4,446,844	+		RR42_RS20520	0.31	+0.4
4,446,844	+		RR42_RS20520	0.31	+1.5
4,446,844	+		RR42_RS20520	0.31	+0.3
4,446,844	+		RR42_RS20520	0.31	-0.5
4,446,845	-		RR42_RS20520	0.31	+0.7
4,446,845	-		RR42_RS20520	0.31	+0.5
4,446,845	-		RR42_RS20520	0.31	+0.3
4,446,845	-		RR42_RS20520	0.31	+0.6
4,446,845	-		RR42_RS20520	0.31	-0.8
4,446,845	-		RR42_RS20520	0.31	-0.9
4,446,845	-		RR42_RS20520	0.31	+0.3
4,446,890	+		RR42_RS20520	0.35	+0.4
4,446,890	+		RR42_RS20520	0.35	+0.6
4,446,938	+		RR42_RS20520	0.38	+1.0
4,446,938	+		RR42_RS20520	0.38	-0.3
4,446,938	+		RR42_RS20520	0.38	+1.1
4,446,939	-		RR42_RS20520	0.38	+0.6
4,446,939	-		RR42_RS20520	0.38	-0.4
4,446,939	-		RR42_RS20520	0.38	-0.2
4,446,939	-		RR42_RS20520	0.38	+0.9
4,446,939	-		RR42_RS20520	0.38	+0.4
4,446,939	-		RR42_RS20520	0.38	+0.1
4,446,939	-		RR42_RS20520	0.38	+0.5