Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18415

Experiment: D-Alanine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (N)
3,987,305	+				+0.4
3,987,350	+				+0.3
3,987,394	-				+2.5
3,987,410	+				-0.4
3,987,416	+				+1.4
3,987,417	-				-1.7
3,987,433	-				-1.5
3,987,477	+				+0.0
3,987,503	-				+1.1
3,987,559	+				+0.0
3,987,559	+				-0.7
3,987,559	+				+0.0
3,987,559	+				-0.6
3,987,560	-				+0.7
3,987,638	+				+0.4
3,987,638	+				-0.0
3,987,639	-				+0.8
3,987,639	-				+0.4
3,987,639	-				-0.3
3,987,639	-				+0.5
3,987,639	-				-0.8
3,987,641	+				+0.3
3,987,642	-				+0.2
3,987,642	-				+0.3
3,987,667	+				-0.5
3,987,667	+				+0.8
3,987,667	+				-0.3
3,987,695	-				-0.3
3,987,695	-				-0.6
3,987,707	-				+0.3
3,987,707	-				+1.5
3,987,707	-				+0.6
3,987,707	-				-0.3
3,987,725	+				+0.7
3,987,726	-				+0.3
3,987,732	+				-1.2
3,987,733	-				-0.5
3,987,733	-				-1.5
3,987,733	-				-0.0
3,987,778	+		RR42_RS18410	0.19	+0.7
3,987,778	+		RR42_RS18410	0.19	-0.8
3,987,805	+		RR42_RS18410	0.26	+0.5
3,987,979	+		RR42_RS18410	0.76	+0.1
3,987,979	+		RR42_RS18410	0.76	+0.4
3,987,979	+		RR42_RS18410	0.76	+0.0
3,987,980	-		RR42_RS18410	0.77	-1.3
3,987,980	-		RR42_RS18410	0.77	-0.0
3,987,980	-		RR42_RS18410	0.77	-2.0
3,987,980	-		RR42_RS18410	0.77	+2.1
3,987,980	-		RR42_RS18410	0.77	-0.3
3,987,980	-		RR42_RS18410	0.77	+0.9
3,987,982	+		RR42_RS18410	0.77	-0.7
3,987,982	+		RR42_RS18410	0.77	-0.1
3,987,983	-		RR42_RS18410	0.78	+0.7
3,987,983	-		RR42_RS18410	0.78	+0.6
3,987,983	-		RR42_RS18410	0.78	+1.0
3,988,064	+				-0.0
3,988,108	+				-0.1
3,988,108	+				-0.7
3,988,108	+				+1.3
3,988,108	+				+0.7
3,988,108	+				+1.4
3,988,108	+				+0.2
3,988,109	-				+0.5
3,988,109	-				+0.1
3,988,109	-				+0.5
3,988,113	+				+0.1
3,988,121	+				-0.7
3,988,124	+				-0.6
3,988,125	-				-0.8
3,988,125	-				+0.9
3,988,125	-				-0.1
3,988,145	-				-0.3
3,988,145	-				-0.3
3,988,145	-				+2.3
3,988,164	+				+0.2
3,988,164	+				+1.6
3,988,164	+				-0.2
3,988,164	+				-0.1
3,988,165	-				-0.5
3,988,172	+				-0.0
3,988,172	+				-0.1
3,988,172	+				+1.3
3,988,172	+				+0.9
3,988,173	-				+1.1
3,988,173	-				-0.3
3,988,173	-				+0.3
3,988,181	+				+0.4
3,988,182	-				-0.2
3,988,182	-				+0.2
3,988,371	-		RR42_RS18415	0.10	+0.0
3,988,380	-		RR42_RS18415	0.11	+0.5
3,988,383	+		RR42_RS18415	0.11	-1.0
3,988,384	-		RR42_RS18415	0.11	+0.2
3,988,384	-		RR42_RS18415	0.11	+0.6
3,988,390	+		RR42_RS18415	0.12	-0.2
3,988,390	+		RR42_RS18415	0.12	+0.4
3,988,391	-		RR42_RS18415	0.12	+0.4
3,988,391	-		RR42_RS18415	0.12	-2.1
3,988,394	+		RR42_RS18415	0.12	+1.3
3,988,394	+		RR42_RS18415	0.12	-0.1
3,988,394	+		RR42_RS18415	0.12	-0.4
3,988,395	-		RR42_RS18415	0.12	+1.9
3,988,395	-		RR42_RS18415	0.12	-0.4
3,988,395	-		RR42_RS18415	0.12	+1.0
3,988,395	-		RR42_RS18415	0.12	-0.1
3,988,395	-		RR42_RS18415	0.12	+0.9
3,988,427	-		RR42_RS18415	0.15	+1.5
3,988,443	-		RR42_RS18415	0.16	+0.1
3,988,443	-		RR42_RS18415	0.16	+0.3
3,988,443	-		RR42_RS18415	0.16	-0.0
3,988,463	+		RR42_RS18415	0.18	-0.3
3,988,464	-		RR42_RS18415	0.18	+0.7
3,988,464	-		RR42_RS18415	0.18	-0.1
3,988,579	+		RR42_RS18415	0.27	+0.7
3,988,579	+		RR42_RS18415	0.27	+0.9
3,988,579	+		RR42_RS18415	0.27	-0.3
3,988,579	+		RR42_RS18415	0.27	-1.1
3,988,580	-		RR42_RS18415	0.28	+0.1
3,988,580	-		RR42_RS18415	0.28	+1.3
3,988,596	-		RR42_RS18415	0.29	-0.3
3,988,617	-		RR42_RS18415	0.31	+0.0
3,988,654	+		RR42_RS18415	0.34	-0.4
3,988,700	+		RR42_RS18415	0.37	+0.5
3,988,776	+		RR42_RS18415	0.44	-0.5
3,988,777	-		RR42_RS18415	0.44	+0.6
3,988,777	-		RR42_RS18415	0.44	-1.6
3,988,860	+		RR42_RS18415	0.50	-0.5
3,988,860	+		RR42_RS18415	0.50	-0.1
3,988,861	-		RR42_RS18415	0.51	+0.7
3,988,861	-		RR42_RS18415	0.51	-0.5
3,988,867	+		RR42_RS18415	0.51	+0.4
3,988,867	+		RR42_RS18415	0.51	-0.4
3,988,868	-		RR42_RS18415	0.51	+0.6
3,988,953	+		RR42_RS18415	0.58	+0.6
3,988,954	-		RR42_RS18415	0.58	-1.1
3,988,954	-		RR42_RS18415	0.58	+0.0
3,989,040	-		RR42_RS18415	0.65	+0.0
3,989,040	-		RR42_RS18415	0.65	-0.1
3,989,080	+		RR42_RS18415	0.68	+0.7
3,989,080	+		RR42_RS18415	0.68	-1.1
3,989,081	-		RR42_RS18415	0.69	+0.9
3,989,081	-		RR42_RS18415	0.69	-1.0
3,989,081	-		RR42_RS18415	0.69	-0.2
3,989,122	+		RR42_RS18415	0.72	+0.9
3,989,122	+		RR42_RS18415	0.72	+0.1
3,989,123	-		RR42_RS18415	0.72	+0.3
3,989,123	-		RR42_RS18415	0.72	+0.5
3,989,186	+		RR42_RS18415	0.77	+0.1
3,989,186	+		RR42_RS18415	0.77	-0.4
3,989,233	+		RR42_RS18415	0.81	-0.2
3,989,233	+		RR42_RS18415	0.81	+0.0
3,989,233	+		RR42_RS18415	0.81	-0.9
3,989,234	-		RR42_RS18415	0.81	+0.6
3,989,234	-		RR42_RS18415	0.81	+1.3
3,989,234	-		RR42_RS18415	0.81	+0.3
3,989,234	-		RR42_RS18415	0.81	-0.9
3,989,234	-		RR42_RS18415	0.81	+0.8
3,989,261	+		RR42_RS18415	0.83	-0.0
3,989,261	+		RR42_RS18415	0.83	-0.6
3,989,261	+		RR42_RS18415	0.83	+0.2
3,989,262	-		RR42_RS18415	0.83	+0.4
3,989,262	-		RR42_RS18415	0.83	+0.3
3,989,262	-		RR42_RS18415	0.83	-1.8
3,989,262	-		RR42_RS18415	0.83	+0.0
3,989,304	+		RR42_RS18415	0.87	+0.6
3,989,304	+		RR42_RS18415	0.87	+1.4
3,989,304	+		RR42_RS18415	0.87	-0.1
3,989,305	-		RR42_RS18415	0.87	-0.2
3,989,305	-		RR42_RS18415	0.87	+0.9
3,989,305	-		RR42_RS18415	0.87	-0.3
3,989,305	-		RR42_RS18415	0.87	+0.3
3,989,305	-		RR42_RS18415	0.87	+0.9
3,989,308	+		RR42_RS18415	0.87	+3.1
3,989,308	+		RR42_RS18415	0.87	-0.2
3,989,308	+		RR42_RS18415	0.87	+0.5
3,989,308	+		RR42_RS18415	0.87	-0.1
3,989,309	-		RR42_RS18415	0.87	-0.8
3,989,309	-		RR42_RS18415	0.87	+1.1
3,989,309	-		RR42_RS18415	0.87	-0.7
3,989,309	-		RR42_RS18415	0.87	+0.5
3,989,309	-		RR42_RS18415	0.87	+0.9
3,989,309	-		RR42_RS18415	0.87	+1.3
3,989,309	-		RR42_RS18415	0.87	+1.3
3,989,309	-		RR42_RS18415	0.87	+0.6
3,989,309	-		RR42_RS18415	0.87	-1.3
3,989,309	-		RR42_RS18415	0.87	-0.0
3,989,389	+				-0.4
3,989,389	+				-1.9
3,989,389	+				+0.2
3,989,390	-				-0.3
3,989,390	-				-1.0
3,989,390	-				+0.0
3,989,417	-				-0.2
3,989,427	+				+0.1
3,989,428	-				+0.6
3,989,428	-				+0.7
3,989,428	-				-0.7
3,989,446	+				+1.4
3,989,447	-				+1.6
3,989,472	+				-1.1
3,989,472	+				+0.4
3,989,473	-				-0.1
3,989,473	-				+0.0
3,989,473	-				+1.1
3,989,599	+				+0.4
3,989,599	+				-0.3
3,989,599	+				-0.4
3,989,600	-				+0.1
3,989,600	-				-0.6
3,989,600	-				+0.4
3,989,600	-				-0.6
3,989,600	-				-0.2
3,989,600	-				+0.6
3,989,600	-				+0.6
3,989,600	-				-2.1
3,989,600	-				+0.6
3,989,600	-				-0.4
3,989,676	+				-0.2
3,989,810	+				+1.8
3,989,810	+				+0.5
3,989,810	+				-0.4
3,989,810	+				+0.1
3,989,810	+				-1.4
3,989,811	-				-0.7
3,989,811	-				+0.0
3,989,816	+				-1.4
3,989,816	+				-0.4
3,989,816	+				+0.2
3,989,816	+				+0.1
3,989,816	+				-1.0
3,989,816	+				-0.5
3,989,817	-				-0.7
3,989,817	-				+0.8
3,989,817	-				-1.2
3,989,817	-				+0.2
3,989,817	-				+0.1
3,989,820	+				+0.0
3,989,820	+				+0.0
3,989,820	+				+0.2
3,989,821	-				+0.4
3,989,821	-				-0.2
3,989,824	-				+0.6
3,989,890	-				-0.4
3,989,924	-				+0.4
3,989,957	+				+0.7
3,989,958	-				-0.6
3,989,983	+				-0.1
3,989,983	+				+0.3
3,989,983	+				+0.9
3,989,984	-				-0.7
3,989,984	-				-0.6
3,989,984	-				-0.9
3,990,001	+				-0.5
3,990,020	+				+0.0
3,990,020	+				+1.3
3,990,021	-				-0.2
3,990,025	+				-0.6
3,990,025	-				-0.5
3,990,026	-				+1.1
3,990,026	-				+0.9
3,990,064	+				-0.6
3,990,136	+				+0.1
3,990,186	+				-0.1
3,990,186	+				-0.2
3,990,187	-				+0.5
3,990,187	-				-1.2
3,990,187	-				+1.0
3,990,187	-				+0.6
3,990,187	-				+0.1
3,990,187	-				-0.3
3,990,190	-				+0.9
3,990,196	+				+0.6
3,990,197	-				+0.7
3,990,291	+				+0.1
3,990,291	+				-0.8
3,990,291	+				+0.2
3,990,292	-				-0.9
3,990,292	-				-0.6
3,990,292	-				-0.2
3,990,395	-				+0.7
3,990,395	-				+2.5