Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04595

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04585 and RR42_RS04590 are separated by 109 nucleotidesRR42_RS04590 and RR42_RS04595 are separated by 25 nucleotidesRR42_RS04595 and RR42_RS04600 are separated by 71 nucleotides RR42_RS04585: RR42_RS04585 - amino acid dehydrogenase, at 1,023,257 to 1,024,561 _RS04585 RR42_RS04590: RR42_RS04590 - AsnC family transcriptional regulator, at 1,024,671 to 1,025,174 _RS04590 RR42_RS04595: RR42_RS04595 - deoxyribodipyrimidine photolyase, at 1,025,200 to 1,026,282 _RS04595 RR42_RS04600: RR42_RS04600 - LysR family transcriptional regulator, at 1,026,354 to 1,027,280 _RS04600 Position (kb) 1025 1026 1027Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1024.221 kb on + strand, within RR42_RS04585at 1024.222 kb on - strand, within RR42_RS04585at 1024.222 kb on - strand, within RR42_RS04585at 1024.260 kb on + strand, within RR42_RS04585at 1024.260 kb on + strand, within RR42_RS04585at 1024.261 kb on - strand, within RR42_RS04585at 1024.410 kb on + strand, within RR42_RS04585at 1024.422 kb on - strand, within RR42_RS04585at 1024.509 kb on + strandat 1024.532 kb on + strandat 1024.532 kb on + strandat 1024.533 kb on - strandat 1024.533 kb on - strandat 1024.533 kb on - strandat 1024.533 kb on - strandat 1024.562 kb on - strandat 1024.595 kb on + strandat 1024.596 kb on - strandat 1024.604 kb on + strandat 1024.605 kb on - strandat 1024.605 kb on - strandat 1024.611 kb on - strandat 1024.613 kb on - strandat 1024.615 kb on + strandat 1024.616 kb on - strandat 1024.666 kb on - strandat 1024.669 kb on + strandat 1024.694 kb on - strandat 1024.751 kb on + strand, within RR42_RS04590at 1024.751 kb on + strand, within RR42_RS04590at 1024.751 kb on + strand, within RR42_RS04590at 1024.751 kb on + strand, within RR42_RS04590at 1024.848 kb on + strand, within RR42_RS04590at 1024.849 kb on - strand, within RR42_RS04590at 1024.851 kb on + strand, within RR42_RS04590at 1024.851 kb on + strand, within RR42_RS04590at 1024.851 kb on + strand, within RR42_RS04590at 1024.852 kb on - strand, within RR42_RS04590at 1024.931 kb on + strand, within RR42_RS04590at 1024.931 kb on + strand, within RR42_RS04590at 1024.931 kb on + strand, within RR42_RS04590at 1024.931 kb on + strand, within RR42_RS04590at 1024.931 kb on + strand, within RR42_RS04590at 1024.932 kb on - strand, within RR42_RS04590at 1024.932 kb on - strand, within RR42_RS04590at 1024.932 kb on - strand, within RR42_RS04590at 1024.975 kb on + strand, within RR42_RS04590at 1024.976 kb on - strand, within RR42_RS04590at 1024.976 kb on - strand, within RR42_RS04590at 1025.010 kb on + strand, within RR42_RS04590at 1025.047 kb on - strand, within RR42_RS04590at 1025.106 kb on + strand, within RR42_RS04590at 1025.106 kb on + strand, within RR42_RS04590at 1025.106 kb on + strand, within RR42_RS04590at 1025.107 kb on - strand, within RR42_RS04590at 1025.107 kb on - strand, within RR42_RS04590at 1025.107 kb on - strand, within RR42_RS04590at 1025.201 kb on + strandat 1025.201 kb on + strandat 1025.202 kb on - strandat 1025.369 kb on + strand, within RR42_RS04595at 1025.370 kb on - strand, within RR42_RS04595at 1025.432 kb on + strand, within RR42_RS04595at 1025.432 kb on + strand, within RR42_RS04595at 1025.432 kb on + strand, within RR42_RS04595at 1025.432 kb on + strand, within RR42_RS04595at 1025.432 kb on + strand, within RR42_RS04595at 1025.433 kb on - strand, within RR42_RS04595at 1025.433 kb on - strand, within RR42_RS04595at 1025.433 kb on - strand, within RR42_RS04595at 1025.433 kb on - strand, within RR42_RS04595at 1025.433 kb on - strand, within RR42_RS04595at 1025.490 kb on + strand, within RR42_RS04595at 1025.490 kb on + strand, within RR42_RS04595at 1025.491 kb on - strand, within RR42_RS04595at 1025.492 kb on + strand, within RR42_RS04595at 1025.492 kb on + strand, within RR42_RS04595at 1025.492 kb on + strand, within RR42_RS04595at 1025.492 kb on + strand, within RR42_RS04595at 1025.492 kb on + strand, within RR42_RS04595at 1025.492 kb on + strand, within RR42_RS04595at 1025.493 kb on - strand, within RR42_RS04595at 1025.493 kb on - strand, within RR42_RS04595at 1025.694 kb on + strand, within RR42_RS04595at 1025.694 kb on + strand, within RR42_RS04595at 1025.695 kb on - strand, within RR42_RS04595at 1025.703 kb on + strand, within RR42_RS04595at 1025.703 kb on + strand, within RR42_RS04595at 1025.703 kb on + strand, within RR42_RS04595at 1025.704 kb on - strand, within RR42_RS04595at 1025.704 kb on - strand, within RR42_RS04595at 1025.704 kb on - strand, within RR42_RS04595at 1025.861 kb on + strand, within RR42_RS04595at 1025.871 kb on + strand, within RR42_RS04595at 1025.871 kb on + strand, within RR42_RS04595at 1025.872 kb on - strand, within RR42_RS04595at 1025.900 kb on - strand, within RR42_RS04595at 1025.903 kb on + strand, within RR42_RS04595at 1025.903 kb on + strand, within RR42_RS04595at 1025.903 kb on + strand, within RR42_RS04595at 1025.903 kb on + strand, within RR42_RS04595at 1025.903 kb on + strand, within RR42_RS04595at 1025.903 kb on + strand, within RR42_RS04595at 1025.903 kb on + strand, within RR42_RS04595at 1025.903 kb on + strand, within RR42_RS04595at 1025.904 kb on - strand, within RR42_RS04595at 1025.904 kb on - strand, within RR42_RS04595at 1025.904 kb on - strand, within RR42_RS04595at 1025.904 kb on - strand, within RR42_RS04595at 1025.904 kb on - strand, within RR42_RS04595at 1026.020 kb on + strand, within RR42_RS04595at 1026.020 kb on + strand, within RR42_RS04595at 1026.021 kb on - strand, within RR42_RS04595at 1026.021 kb on - strand, within RR42_RS04595at 1026.021 kb on - strand, within RR42_RS04595at 1026.021 kb on - strand, within RR42_RS04595at 1026.026 kb on + strand, within RR42_RS04595at 1026.026 kb on + strand, within RR42_RS04595at 1026.026 kb on + strand, within RR42_RS04595at 1026.026 kb on + strand, within RR42_RS04595at 1026.026 kb on + strand, within RR42_RS04595at 1026.026 kb on + strand, within RR42_RS04595at 1026.027 kb on - strand, within RR42_RS04595at 1026.027 kb on - strand, within RR42_RS04595at 1026.027 kb on - strand, within RR42_RS04595at 1026.027 kb on - strand, within RR42_RS04595at 1026.027 kb on - strand, within RR42_RS04595at 1026.027 kb on - strand, within RR42_RS04595at 1026.027 kb on - strand, within RR42_RS04595at 1026.027 kb on - strand, within RR42_RS04595at 1026.027 kb on - strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.030 kb on + strand, within RR42_RS04595at 1026.031 kb on - strand, within RR42_RS04595at 1026.031 kb on - strand, within RR42_RS04595at 1026.031 kb on - strand, within RR42_RS04595at 1026.031 kb on - strand, within RR42_RS04595at 1026.031 kb on - strand, within RR42_RS04595at 1026.031 kb on - strand, within RR42_RS04595at 1026.300 kb on + strandat 1026.301 kb on - strandat 1026.336 kb on + strandat 1026.336 kb on + strandat 1026.356 kb on - strandat 1026.394 kb on + strandat 1026.547 kb on + strand, within RR42_RS04600at 1026.547 kb on + strand, within RR42_RS04600at 1026.548 kb on - strand, within RR42_RS04600at 1026.548 kb on - strand, within RR42_RS04600at 1027.158 kb on + strand, within RR42_RS04600at 1027.158 kb on + strand, within RR42_RS04600at 1027.159 kb on - strand, within RR42_RS04600

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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1,024,221 + RR42_RS04585 0.74 -3.3
1,024,222 - RR42_RS04585 0.74 +1.5
1,024,222 - RR42_RS04585 0.74 -2.5
1,024,260 + RR42_RS04585 0.77 -1.7
1,024,260 + RR42_RS04585 0.77 -0.2
1,024,261 - RR42_RS04585 0.77 -2.4
1,024,410 + RR42_RS04585 0.88 -3.5
1,024,422 - RR42_RS04585 0.89 +1.0
1,024,509 + -2.5
1,024,532 + -2.7
1,024,532 + -1.6
1,024,533 - -1.4
1,024,533 - -3.7
1,024,533 - -2.8
1,024,533 - -3.7
1,024,562 - -1.3
1,024,595 + -2.2
1,024,596 - +0.5
1,024,604 + -3.3
1,024,605 - +0.2
1,024,605 - -0.7
1,024,611 - -2.0
1,024,613 - -2.7
1,024,615 + -2.4
1,024,616 - -1.1
1,024,666 - -1.1
1,024,669 + -1.3
1,024,694 - -1.3
1,024,751 + RR42_RS04590 0.16 -2.4
1,024,751 + RR42_RS04590 0.16 -0.8
1,024,751 + RR42_RS04590 0.16 -1.8
1,024,751 + RR42_RS04590 0.16 -2.6
1,024,848 + RR42_RS04590 0.35 -2.9
1,024,849 - RR42_RS04590 0.35 -1.0
1,024,851 + RR42_RS04590 0.36 -2.4
1,024,851 + RR42_RS04590 0.36 +0.7
1,024,851 + RR42_RS04590 0.36 +0.0
1,024,852 - RR42_RS04590 0.36 -1.9
1,024,931 + RR42_RS04590 0.52 -0.5
1,024,931 + RR42_RS04590 0.52 -1.1
1,024,931 + RR42_RS04590 0.52 -3.3
1,024,931 + RR42_RS04590 0.52 -2.1
1,024,931 + RR42_RS04590 0.52 +0.0
1,024,932 - RR42_RS04590 0.52 -3.7
1,024,932 - RR42_RS04590 0.52 -0.5
1,024,932 - RR42_RS04590 0.52 -0.5
1,024,975 + RR42_RS04590 0.60 -2.9
1,024,976 - RR42_RS04590 0.61 -1.7
1,024,976 - RR42_RS04590 0.61 -0.3
1,025,010 + RR42_RS04590 0.67 -3.5
1,025,047 - RR42_RS04590 0.75 -2.1
1,025,106 + RR42_RS04590 0.86 -3.0
1,025,106 + RR42_RS04590 0.86 -1.0
1,025,106 + RR42_RS04590 0.86 +0.1
1,025,107 - RR42_RS04590 0.87 -1.7
1,025,107 - RR42_RS04590 0.87 -2.1
1,025,107 - RR42_RS04590 0.87 -3.6
1,025,201 + -2.5
1,025,201 + -1.3
1,025,202 - -0.1
1,025,369 + RR42_RS04595 0.16 +0.3
1,025,370 - RR42_RS04595 0.16 +0.1
1,025,432 + RR42_RS04595 0.21 +0.6
1,025,432 + RR42_RS04595 0.21 -1.1
1,025,432 + RR42_RS04595 0.21 -0.9
1,025,432 + RR42_RS04595 0.21 -0.7
1,025,432 + RR42_RS04595 0.21 +0.0
1,025,433 - RR42_RS04595 0.22 +0.0
1,025,433 - RR42_RS04595 0.22 -0.8
1,025,433 - RR42_RS04595 0.22 +0.3
1,025,433 - RR42_RS04595 0.22 -0.5
1,025,433 - RR42_RS04595 0.22 -0.4
1,025,490 + RR42_RS04595 0.27 -1.8
1,025,490 + RR42_RS04595 0.27 -0.8
1,025,491 - RR42_RS04595 0.27 -1.0
1,025,492 + RR42_RS04595 0.27 -1.3
1,025,492 + RR42_RS04595 0.27 -0.6
1,025,492 + RR42_RS04595 0.27 -2.0
1,025,492 + RR42_RS04595 0.27 -1.5
1,025,492 + RR42_RS04595 0.27 +0.7
1,025,492 + RR42_RS04595 0.27 -0.2
1,025,493 - RR42_RS04595 0.27 -0.1
1,025,493 - RR42_RS04595 0.27 +1.0
1,025,694 + RR42_RS04595 0.46 -0.2
1,025,694 + RR42_RS04595 0.46 -0.2
1,025,695 - RR42_RS04595 0.46 -0.5
1,025,703 + RR42_RS04595 0.46 +1.3
1,025,703 + RR42_RS04595 0.46 -1.7
1,025,703 + RR42_RS04595 0.46 +0.6
1,025,704 - RR42_RS04595 0.47 +0.4
1,025,704 - RR42_RS04595 0.47 -0.7
1,025,704 - RR42_RS04595 0.47 +0.3
1,025,861 + RR42_RS04595 0.61 -1.0
1,025,871 + RR42_RS04595 0.62 -0.7
1,025,871 + RR42_RS04595 0.62 +0.7
1,025,872 - RR42_RS04595 0.62 +0.2
1,025,900 - RR42_RS04595 0.65 -0.4
1,025,903 + RR42_RS04595 0.65 -0.5
1,025,903 + RR42_RS04595 0.65 -1.1
1,025,903 + RR42_RS04595 0.65 -1.4
1,025,903 + RR42_RS04595 0.65 -0.3
1,025,903 + RR42_RS04595 0.65 +0.1
1,025,903 + RR42_RS04595 0.65 +0.4
1,025,903 + RR42_RS04595 0.65 +0.2
1,025,903 + RR42_RS04595 0.65 +0.0
1,025,904 - RR42_RS04595 0.65 -1.0
1,025,904 - RR42_RS04595 0.65 -0.1
1,025,904 - RR42_RS04595 0.65 -2.5
1,025,904 - RR42_RS04595 0.65 +0.4
1,025,904 - RR42_RS04595 0.65 +1.9
1,026,020 + RR42_RS04595 0.76 -0.2
1,026,020 + RR42_RS04595 0.76 +0.3
1,026,021 - RR42_RS04595 0.76 -0.6
1,026,021 - RR42_RS04595 0.76 -0.1
1,026,021 - RR42_RS04595 0.76 +0.9
1,026,021 - RR42_RS04595 0.76 -0.3
1,026,026 + RR42_RS04595 0.76 +0.0
1,026,026 + RR42_RS04595 0.76 +0.5
1,026,026 + RR42_RS04595 0.76 +1.0
1,026,026 + RR42_RS04595 0.76 +0.2
1,026,026 + RR42_RS04595 0.76 +1.3
1,026,026 + RR42_RS04595 0.76 -0.2
1,026,027 - RR42_RS04595 0.76 -0.2
1,026,027 - RR42_RS04595 0.76 +0.3
1,026,027 - RR42_RS04595 0.76 -0.8
1,026,027 - RR42_RS04595 0.76 -0.0
1,026,027 - RR42_RS04595 0.76 +0.0
1,026,027 - RR42_RS04595 0.76 +0.0
1,026,027 - RR42_RS04595 0.76 -1.3
1,026,027 - RR42_RS04595 0.76 +0.1
1,026,027 - RR42_RS04595 0.76 -0.6
1,026,030 + RR42_RS04595 0.77 +1.0
1,026,030 + RR42_RS04595 0.77 +0.1
1,026,030 + RR42_RS04595 0.77 -0.2
1,026,030 + RR42_RS04595 0.77 -0.4
1,026,030 + RR42_RS04595 0.77 +0.8
1,026,030 + RR42_RS04595 0.77 -0.1
1,026,030 + RR42_RS04595 0.77 +0.1
1,026,030 + RR42_RS04595 0.77 +0.5
1,026,030 + RR42_RS04595 0.77 +0.1
1,026,030 + RR42_RS04595 0.77 +1.9
1,026,030 + RR42_RS04595 0.77 -0.7
1,026,030 + RR42_RS04595 0.77 +1.0
1,026,030 + RR42_RS04595 0.77 +0.0
1,026,031 - RR42_RS04595 0.77 -0.2
1,026,031 - RR42_RS04595 0.77 -1.4
1,026,031 - RR42_RS04595 0.77 -0.2
1,026,031 - RR42_RS04595 0.77 +0.3
1,026,031 - RR42_RS04595 0.77 -0.5
1,026,031 - RR42_RS04595 0.77 +0.7
1,026,300 + +0.2
1,026,301 - +0.0
1,026,336 + -1.4
1,026,336 + +0.8
1,026,356 - +0.9
1,026,394 + +0.3
1,026,547 + RR42_RS04600 0.21 -0.4
1,026,547 + RR42_RS04600 0.21 +0.4
1,026,548 - RR42_RS04600 0.21 +0.3
1,026,548 - RR42_RS04600 0.21 +0.1
1,027,158 + RR42_RS04600 0.87 +0.3
1,027,158 + RR42_RS04600 0.87 -0.6
1,027,159 - RR42_RS04600 0.87 -0.8

Or see this region's nucleotide sequence