Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02365 and RR42_RS02370 are separated by 10 nucleotides RR42_RS02370 and RR42_RS02375 are separated by 398 nucleotides RR42_RS02375 and RR42_RS02380 are separated by 158 nucleotides
RR42_RS02365: RR42_RS02365 - carbon monoxide dehydrogenase, at 529,543 to 531,924
_RS02365
RR42_RS02370: RR42_RS02370 - carbon monoxide dehydrogenase, at 531,935 to 532,417
_RS02370
RR42_RS02375: RR42_RS02375 - membrane protein, at 532,816 to 533,394
_RS02375
RR42_RS02380: RR42_RS02380 - FAD-linked oxidase, at 533,553 to 537,527
_RS02380
Position (kb) 532
533
534 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 531.839 kb on + strand at 531.866 kb on + strand at 531.866 kb on + strand at 531.867 kb on - strand at 532.364 kb on + strand, within RR42_RS02370 at 532.521 kb on + strand at 532.522 kb on - strand at 532.545 kb on + strand at 532.554 kb on - strand at 532.626 kb on + strand at 532.627 kb on - strand at 532.627 kb on - strand at 532.627 kb on - strand at 532.731 kb on - strand at 532.731 kb on - strand at 532.813 kb on + strand at 532.813 kb on + strand at 532.813 kb on + strand at 532.814 kb on - strand at 532.815 kb on + strand at 532.815 kb on + strand at 532.815 kb on + strand at 532.819 kb on - strand at 532.946 kb on - strand, within RR42_RS02375 at 532.947 kb on + strand, within RR42_RS02375 at 532.948 kb on - strand, within RR42_RS02375 at 532.948 kb on - strand, within RR42_RS02375 at 532.948 kb on - strand, within RR42_RS02375 at 533.161 kb on + strand, within RR42_RS02375 at 533.162 kb on - strand, within RR42_RS02375 at 533.284 kb on + strand, within RR42_RS02375 at 533.284 kb on + strand, within RR42_RS02375 at 533.284 kb on + strand, within RR42_RS02375 at 533.285 kb on - strand, within RR42_RS02375 at 533.285 kb on - strand, within RR42_RS02375 at 533.285 kb on - strand, within RR42_RS02375 at 533.312 kb on - strand, within RR42_RS02375 at 533.312 kb on - strand, within RR42_RS02375 at 533.392 kb on + strand at 533.392 kb on + strand at 533.392 kb on + strand at 533.392 kb on + strand at 533.392 kb on + strand at 533.487 kb on - strand at 533.487 kb on - strand at 533.626 kb on - strand at 533.745 kb on + strand at 534.001 kb on - strand, within RR42_RS02380 at 534.120 kb on + strand, within RR42_RS02380 at 534.229 kb on - strand, within RR42_RS02380
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 531,839 + -0.5 531,866 + -0.1 531,866 + +2.2 531,867 - +1.1 532,364 + RR42_RS02370 0.89 -0.1 532,521 + +1.2 532,522 - +3.8 532,545 + +0.2 532,554 - -1.4 532,626 + +0.0 532,627 - +1.0 532,627 - -0.9 532,627 - -0.3 532,731 - -0.9 532,731 - -0.4 532,813 + +1.2 532,813 + +0.1 532,813 + +0.6 532,814 - -1.8 532,815 + -0.7 532,815 + -0.7 532,815 + +0.3 532,819 - -0.4 532,946 - RR42_RS02375 0.22 -1.3 532,947 + RR42_RS02375 0.23 +0.1 532,948 - RR42_RS02375 0.23 -1.4 532,948 - RR42_RS02375 0.23 -2.2 532,948 - RR42_RS02375 0.23 -0.8 533,161 + RR42_RS02375 0.60 -2.5 533,162 - RR42_RS02375 0.60 -0.5 533,284 + RR42_RS02375 0.81 -0.5 533,284 + RR42_RS02375 0.81 +0.4 533,284 + RR42_RS02375 0.81 +0.1 533,285 - RR42_RS02375 0.81 -0.6 533,285 - RR42_RS02375 0.81 -0.7 533,285 - RR42_RS02375 0.81 -0.8 533,312 - RR42_RS02375 0.86 -1.2 533,312 - RR42_RS02375 0.86 -0.5 533,392 + +0.7 533,392 + +0.1 533,392 + +0.5 533,392 + -1.1 533,392 + -1.4 533,487 - +0.6 533,487 - +0.4 533,626 - -0.8 533,745 + +0.5 534,001 - RR42_RS02380 0.11 +0.5 534,120 + RR42_RS02380 0.14 -0.6 534,229 - RR42_RS02380 0.17 +1.6
Or see this region's nucleotide sequence