Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02330 and RR42_RS02335 are separated by 14 nucleotides RR42_RS02335 and RR42_RS02340 are separated by 20 nucleotides RR42_RS02340 and RR42_RS02345 overlap by 28 nucleotides RR42_RS02345 and RR42_RS02350 overlap by 10 nucleotides
RR42_RS02330: RR42_RS02330 - trehalose-6-phosphate synthase, at 522,790 to 524,190
_RS02330
RR42_RS02335: RR42_RS02335 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 524,205 to 524,810
_RS02335
RR42_RS02340: RR42_RS02340 - lipoprotein, at 524,831 to 525,859
_RS02340
RR42_RS02345: RR42_RS02345 - carbon monoxide dehydrogenase, at 525,832 to 526,413
_RS02345
RR42_RS02350: RR42_RS02350 - VWA domain-containing protein, at 526,404 to 527,699
_RS02350
Position (kb) 524
525
526 Strain fitness (log2 ratio) -1
0
1
2 at 523.962 kb on - strand, within RR42_RS02330 at 524.017 kb on + strand, within RR42_RS02330 at 524.022 kb on + strand, within RR42_RS02330 at 524.023 kb on - strand, within RR42_RS02330 at 524.061 kb on + strand at 524.062 kb on - strand at 524.062 kb on - strand at 524.062 kb on - strand at 524.062 kb on - strand at 524.146 kb on + strand at 524.146 kb on + strand at 524.147 kb on - strand at 524.147 kb on - strand at 524.181 kb on - strand at 524.224 kb on - strand at 524.658 kb on + strand, within RR42_RS02335 at 524.994 kb on + strand, within RR42_RS02340 at 524.994 kb on + strand, within RR42_RS02340 at 524.995 kb on - strand, within RR42_RS02340 at 525.105 kb on + strand, within RR42_RS02340 at 525.106 kb on - strand, within RR42_RS02340 at 525.106 kb on - strand, within RR42_RS02340 at 525.270 kb on + strand, within RR42_RS02340 at 525.271 kb on - strand, within RR42_RS02340 at 525.333 kb on + strand, within RR42_RS02340 at 525.615 kb on + strand, within RR42_RS02340 at 525.791 kb on + strand at 525.792 kb on - strand at 526.011 kb on + strand, within RR42_RS02345 at 526.012 kb on - strand, within RR42_RS02345 at 526.095 kb on - strand, within RR42_RS02345 at 526.193 kb on + strand, within RR42_RS02345 at 526.382 kb on - strand at 526.687 kb on - strand, within RR42_RS02350
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 523,962 - RR42_RS02330 0.84 +0.4 524,017 + RR42_RS02330 0.88 +0.5 524,022 + RR42_RS02330 0.88 -0.5 524,023 - RR42_RS02330 0.88 -0.0 524,061 + +0.4 524,062 - -0.2 524,062 - -0.6 524,062 - -0.0 524,062 - -0.2 524,146 + -1.7 524,146 + +0.9 524,147 - -0.4 524,147 - -0.2 524,181 - -1.3 524,224 - -0.5 524,658 + RR42_RS02335 0.75 -0.4 524,994 + RR42_RS02340 0.16 +0.4 524,994 + RR42_RS02340 0.16 -0.8 524,995 - RR42_RS02340 0.16 +0.6 525,105 + RR42_RS02340 0.27 -0.5 525,106 - RR42_RS02340 0.27 -1.6 525,106 - RR42_RS02340 0.27 -0.5 525,270 + RR42_RS02340 0.43 +0.0 525,271 - RR42_RS02340 0.43 +1.0 525,333 + RR42_RS02340 0.49 +0.4 525,615 + RR42_RS02340 0.76 -0.6 525,791 + -0.1 525,792 - +0.4 526,011 + RR42_RS02345 0.31 -0.7 526,012 - RR42_RS02345 0.31 -0.2 526,095 - RR42_RS02345 0.45 +2.2 526,193 + RR42_RS02345 0.62 -0.6 526,382 - -0.7 526,687 - RR42_RS02350 0.22 -0.3
Or see this region's nucleotide sequence