Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00375 and RR42_RS00380 are separated by 163 nucleotides RR42_RS00380 and RR42_RS00385 overlap by 4 nucleotides RR42_RS00385 and RR42_RS00390 are separated by 457 nucleotides
RR42_RS00375: RR42_RS00375 - MFS transporter, at 101,070 to 102,368
_RS00375
RR42_RS00380: RR42_RS00380 - GntR family transcriptional regulator, at 102,532 to 103,278
_RS00380
RR42_RS00385: RR42_RS00385 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 103,275 to 104,117
_RS00385
RR42_RS00390: RR42_RS00390 - amidohydrolase, at 104,575 to 105,843
_RS00390
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1 at 102.574 kb on - strand at 102.574 kb on - strand at 102.772 kb on + strand, within RR42_RS00380 at 102.773 kb on - strand, within RR42_RS00380 at 102.958 kb on + strand, within RR42_RS00380 at 102.958 kb on + strand, within RR42_RS00380 at 102.959 kb on - strand, within RR42_RS00380 at 102.959 kb on - strand, within RR42_RS00380 at 102.959 kb on - strand, within RR42_RS00380 at 103.030 kb on + strand, within RR42_RS00380 at 103.030 kb on + strand, within RR42_RS00380 at 103.030 kb on + strand, within RR42_RS00380 at 103.030 kb on + strand, within RR42_RS00380 at 103.030 kb on + strand, within RR42_RS00380 at 103.030 kb on + strand, within RR42_RS00380 at 103.031 kb on - strand, within RR42_RS00380 at 103.031 kb on - strand, within RR42_RS00380 at 103.031 kb on - strand, within RR42_RS00380 at 103.084 kb on - strand, within RR42_RS00380 at 103.282 kb on + strand at 103.282 kb on + strand at 103.282 kb on + strand at 103.283 kb on - strand at 103.283 kb on - strand at 103.283 kb on - strand at 103.285 kb on + strand at 103.285 kb on + strand at 103.286 kb on - strand at 103.286 kb on - strand at 103.286 kb on - strand at 103.286 kb on - strand at 103.295 kb on + strand at 103.510 kb on - strand, within RR42_RS00385 at 103.510 kb on - strand, within RR42_RS00385 at 103.947 kb on + strand, within RR42_RS00385 at 104.109 kb on + strand at 104.115 kb on + strand at 104.115 kb on + strand at 104.116 kb on - strand at 104.199 kb on + strand at 104.199 kb on + strand at 104.203 kb on + strand at 104.251 kb on + strand at 104.351 kb on + strand at 104.376 kb on - strand at 104.476 kb on - strand at 104.486 kb on - strand at 104.517 kb on + strand at 104.536 kb on + strand at 104.546 kb on - strand at 104.568 kb on + strand at 104.815 kb on + strand, within RR42_RS00390 at 104.945 kb on - strand, within RR42_RS00390
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 102,574 - -2.7 102,574 - -0.9 102,772 + RR42_RS00380 0.32 -0.5 102,773 - RR42_RS00380 0.32 -1.1 102,958 + RR42_RS00380 0.57 -2.0 102,958 + RR42_RS00380 0.57 +1.3 102,959 - RR42_RS00380 0.57 -1.5 102,959 - RR42_RS00380 0.57 -2.2 102,959 - RR42_RS00380 0.57 -2.5 103,030 + RR42_RS00380 0.67 -1.3 103,030 + RR42_RS00380 0.67 -2.1 103,030 + RR42_RS00380 0.67 -1.2 103,030 + RR42_RS00380 0.67 -2.4 103,030 + RR42_RS00380 0.67 -1.4 103,030 + RR42_RS00380 0.67 -0.4 103,031 - RR42_RS00380 0.67 -2.6 103,031 - RR42_RS00380 0.67 -1.5 103,031 - RR42_RS00380 0.67 -1.5 103,084 - RR42_RS00380 0.74 -0.6 103,282 + -0.1 103,282 + +0.3 103,282 + +0.7 103,283 - -0.1 103,283 - +0.3 103,283 - -0.3 103,285 + -0.0 103,285 + +0.2 103,286 - -0.3 103,286 - -0.4 103,286 - +0.7 103,286 - +0.1 103,295 + +0.5 103,510 - RR42_RS00385 0.28 -0.2 103,510 - RR42_RS00385 0.28 -0.3 103,947 + RR42_RS00385 0.80 -1.8 104,109 + -0.5 104,115 + -0.5 104,115 + +0.3 104,116 - -0.8 104,199 + -0.1 104,199 + +1.5 104,203 + +0.2 104,251 + +0.7 104,351 + -1.5 104,376 - -1.0 104,476 - +0.6 104,486 - -0.5 104,517 + +0.9 104,536 + -0.1 104,546 - -0.1 104,568 + -0.3 104,815 + RR42_RS00390 0.19 +0.7 104,945 - RR42_RS00390 0.29 -0.4
Or see this region's nucleotide sequence