Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01479

Experiment: PYE with sodium fluoride 7.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with sodium fluoride 7.5 mM
1,585,415	+		CCNA_01477	0.86	+0.4
1,585,450	+		CCNA_01477	0.89	-0.2
1,585,450	+		CCNA_01477	0.89	-0.9
1,585,497	+				+0.7
1,585,505	-				-0.6
1,585,505	-				+1.2
1,585,586	+				+0.3
1,585,586	+				+1.1
1,585,586	+				-0.1
1,585,586	+				-0.1
1,585,586	+				-2.3
1,585,594	-				+0.6
1,585,594	-				-0.9
1,585,594	-				+0.1
1,585,594	-				+0.1
1,585,594	-				-0.6
1,585,594	-				+0.5
1,585,596	+				-0.2
1,585,596	+				+0.5
1,585,596	+				-0.4
1,585,596	+				-0.2
1,585,604	-				-0.9
1,585,604	-				+1.0
1,585,604	-				+0.1
1,585,604	-				+0.0
1,585,604	-				-1.5
1,585,604	-				-0.4
1,585,611	-				-0.2
1,585,626	+				-0.3
1,585,626	+				+0.3
1,585,683	+		CCNA_01478	0.11	+0.5
1,585,683	+		CCNA_01478	0.11	-1.1
1,585,691	-		CCNA_01478	0.12	-0.6
1,585,691	-		CCNA_01478	0.12	-0.3
1,585,715	+		CCNA_01478	0.16	-1.7
1,585,715	+		CCNA_01478	0.16	-0.2
1,585,715	+		CCNA_01478	0.16	-1.1
1,585,715	+		CCNA_01478	0.16	+0.1
1,585,716	-		CCNA_01478	0.16	-1.6
1,585,723	-		CCNA_01478	0.17	-0.6
1,585,723	-		CCNA_01478	0.17	+0.2
1,585,770	-		CCNA_01478	0.23	-0.1
1,585,780	-		CCNA_01478	0.24	+0.8
1,585,818	+		CCNA_01478	0.29	-0.1
1,585,820	+		CCNA_01478	0.30	+0.8
1,585,827	+		CCNA_01478	0.31	+0.9
1,585,833	-		CCNA_01478	0.31	+0.4
1,585,892	-		CCNA_01478	0.39	+0.3
1,585,895	+		CCNA_01478	0.40	-0.6
1,585,908	-		CCNA_01478	0.41	-0.1
1,585,942	-		CCNA_01478	0.46	+0.0
1,585,944	+		CCNA_01478	0.46	-2.7
1,585,994	+		CCNA_01478	0.53	-1.7
1,585,994	-		CCNA_01478	0.53	-0.2
1,586,018	-		CCNA_01478	0.56	-1.6
1,586,019	+		CCNA_01478	0.56	-0.1
1,586,029	+		CCNA_01478	0.58	-0.8
1,586,029	+		CCNA_01478	0.58	+0.2
1,586,037	-		CCNA_01478	0.59	-1.0
1,586,062	+		CCNA_01478	0.62	-0.4
1,586,062	+		CCNA_01478	0.62	-0.6
1,586,082	-		CCNA_01478	0.65	+1.4
1,586,104	-		CCNA_01478	0.68	-0.8
1,586,117	+		CCNA_01478	0.69	-0.5
1,586,117	+		CCNA_01478	0.69	+0.4
1,586,149	-		CCNA_01478	0.74	-1.1
1,586,180	+		CCNA_01478	0.78	-1.6
1,586,180	+		CCNA_01478	0.78	+0.2
1,586,188	-		CCNA_01478	0.79	+0.7
1,586,268	-		CCNA_01478	0.90	-0.4
1,586,276	+				+0.1
1,586,276	+				-1.9
1,586,276	+				+0.9
1,586,284	-				-0.2
1,586,299	+				-1.0
1,586,299	+				-0.4
1,586,323	-				-1.0
1,586,347	+				+1.1
1,586,350	-				-0.6
1,586,353	+				-0.0
1,586,353	+				-0.1
1,586,353	+				-0.6
1,586,361	-				-0.6
1,586,388	+				-0.2
1,586,405	+				+0.3
1,586,413	-				+0.6
1,586,415	+				+0.4
1,586,415	+				-1.4
1,586,423	-				-1.0
1,586,431	+				-0.6
1,586,439	-				-0.5
1,586,456	-				-0.8
1,586,457	+				+0.6
1,586,461	+				+0.2
1,586,489	+				+1.0
1,586,523	+				-0.2
1,586,523	+				+0.0
1,586,523	+				+0.2
1,586,523	+				-0.6
1,586,531	-				-0.7
1,586,531	-				-1.9
1,586,531	-				-0.6
1,586,531	-				+0.0
1,586,531	-				+0.8
1,586,531	-				-2.1
1,586,531	-				-0.6
1,586,531	-				-0.5
1,586,594	+		CCNA_01479	0.10	+0.1
1,586,594	+		CCNA_01479	0.10	-0.2
1,586,594	+		CCNA_01479	0.10	-1.9
1,586,594	+		CCNA_01479	0.10	-1.0
1,586,594	+		CCNA_01479	0.10	-0.3
1,586,594	+		CCNA_01479	0.10	-0.2
1,586,595	+		CCNA_01479	0.10	-2.5
1,586,602	-		CCNA_01479	0.11	+0.5
1,586,602	-		CCNA_01479	0.11	-0.9
1,586,602	-		CCNA_01479	0.11	-2.0
1,586,602	-		CCNA_01479	0.11	-1.0
1,586,655	-		CCNA_01479	0.13	-0.2
1,586,692	-		CCNA_01479	0.15	-3.4
1,586,707	-		CCNA_01479	0.16	+0.1
1,586,729	-		CCNA_01479	0.17	-1.2
1,586,732	+		CCNA_01479	0.17	-0.5
1,586,738	+		CCNA_01479	0.17	+2.4
1,586,755	+		CCNA_01479	0.18	+0.0
1,586,808	+		CCNA_01479	0.21	+0.7
1,586,835	+		CCNA_01479	0.22	+0.6
1,586,845	+		CCNA_01479	0.22	-0.4
1,586,883	+		CCNA_01479	0.24	-1.5
1,586,883	+		CCNA_01479	0.24	-0.5
1,586,883	+		CCNA_01479	0.24	-0.5
1,586,883	+		CCNA_01479	0.24	+0.6
1,586,891	-		CCNA_01479	0.25	+0.0
1,586,891	-		CCNA_01479	0.25	-1.1
1,586,912	+		CCNA_01479	0.26	-0.5
1,586,919	+		CCNA_01479	0.26	-1.5
1,586,919	+		CCNA_01479	0.26	-0.4
1,586,924	+		CCNA_01479	0.26	+0.2
1,586,926	+		CCNA_01479	0.26	-0.7
1,586,936	+		CCNA_01479	0.27	-1.3
1,586,949	-		CCNA_01479	0.28	-2.7
1,586,959	-		CCNA_01479	0.28	-2.0
1,586,994	+		CCNA_01479	0.30	+1.7
1,586,994	+		CCNA_01479	0.30	-1.8
1,587,044	+		CCNA_01479	0.32	-1.9
1,587,051	+		CCNA_01479	0.32	-1.0
1,587,136	-		CCNA_01479	0.37	-0.5
1,587,183	-		CCNA_01479	0.39	-0.9
1,587,189	-		CCNA_01479	0.39	-1.5
1,587,236	+		CCNA_01479	0.41	-1.3
1,587,236	+		CCNA_01479	0.41	-0.6
1,587,236	+		CCNA_01479	0.41	-0.9
1,587,236	+		CCNA_01479	0.41	-0.6
1,587,236	+		CCNA_01479	0.41	-1.0
1,587,244	-		CCNA_01479	0.42	-0.6
1,587,244	-		CCNA_01479	0.42	-0.9
1,587,244	-		CCNA_01479	0.42	-1.2
1,587,244	-		CCNA_01479	0.42	-0.8
1,587,288	+		CCNA_01479	0.44	+0.5
1,587,288	+		CCNA_01479	0.44	-0.5
1,587,330	-		CCNA_01479	0.46	-0.3
1,587,335	+		CCNA_01479	0.46	-0.6
1,587,343	-		CCNA_01479	0.47	-1.9
1,587,346	+		CCNA_01479	0.47	+0.8
1,587,346	+		CCNA_01479	0.47	-0.6
1,587,346	+		CCNA_01479	0.47	+0.5
1,587,354	-		CCNA_01479	0.47	+0.2
1,587,366	-		CCNA_01479	0.48	-1.9
1,587,384	-		CCNA_01479	0.49	+0.4
1,587,428	-		CCNA_01479	0.51	+0.2
1,587,461	+		CCNA_01479	0.52	-0.1
1,587,469	-		CCNA_01479	0.53	-0.2
1,587,518	-		CCNA_01479	0.55	-0.4
1,587,568	+		CCNA_01479	0.58	-1.0
1,587,583	+				+0.5
1,587,591	-		CCNA_01479	0.59	-0.9
1,587,611	+		CCNA_01479	0.60	+0.5
1,587,611	+		CCNA_01479	0.60	-0.2
1,587,611	+		CCNA_01479	0.60	+1.8
1,587,634	+		CCNA_01479	0.61	+0.2
1,587,634	+		CCNA_01479	0.61	-1.2
1,587,639	+		CCNA_01479	0.61	-0.3
1,587,642	-		CCNA_01479	0.61	+0.9
1,587,666	-		CCNA_01479	0.62	-0.5
1,587,722	+		CCNA_01479	0.65	-0.6
1,587,729	-		CCNA_01479	0.65	-0.6
1,587,741	-		CCNA_01479	0.66	-0.5
1,587,743	+		CCNA_01479	0.66	+0.4
1,587,782	+		CCNA_01479	0.68	-0.5
1,587,787	+		CCNA_01479	0.68	-0.1
1,587,790	-		CCNA_01479	0.68	+0.7
1,587,790	-		CCNA_01479	0.68	-1.0
1,587,790	-		CCNA_01479	0.68	-0.8
1,587,801	-		CCNA_01479	0.69	-1.9
1,587,872	+		CCNA_01479	0.72	-1.1
1,587,872	+		CCNA_01479	0.72	+0.4
1,587,872	+		CCNA_01479	0.72	+0.4
1,587,872	+		CCNA_01479	0.72	+0.4
1,587,873	+		CCNA_01479	0.72	+0.5
1,587,911	-		CCNA_01479	0.74	-1.8
1,587,920	+		CCNA_01479	0.75	+0.3
1,587,925	+		CCNA_01479	0.75	-0.0
1,587,961	-		CCNA_01479	0.77	-1.0
1,587,962	+		CCNA_01479	0.77	-0.8
1,587,962	+		CCNA_01479	0.77	-0.4
1,587,962	+		CCNA_01479	0.77	-0.7
1,587,962	+		CCNA_01479	0.77	+0.4
1,587,962	+		CCNA_01479	0.77	+1.0
1,587,962	+		CCNA_01479	0.77	+1.4
1,587,970	-		CCNA_01479	0.77	-0.2
1,587,970	-		CCNA_01479	0.77	+0.1
1,587,970	-		CCNA_01479	0.77	+0.0
1,587,970	-		CCNA_01479	0.77	-0.8
1,587,970	-		CCNA_01479	0.77	-1.5
1,587,980	-		CCNA_01479	0.77	-1.0
1,588,019	+		CCNA_01479	0.79	-0.4
1,588,019	+		CCNA_01479	0.79	+0.8
1,588,019	+		CCNA_01479	0.79	-0.1
1,588,027	-		CCNA_01479	0.80	-2.2
1,588,028	+		CCNA_01479	0.80	-0.2
1,588,041	-		CCNA_01479	0.80	-2.5
1,588,049	-		CCNA_01479	0.81	+0.8
1,588,058	+		CCNA_01479	0.81	-1.7
1,588,074	+		CCNA_01479	0.82	-0.5
1,588,079	+		CCNA_01479	0.82	-1.2
1,588,124	+		CCNA_01479	0.84	-1.1
1,588,124	+		CCNA_01479	0.84	-1.2
1,588,124	+		CCNA_01479	0.84	+0.2
1,588,150	-		CCNA_01479	0.86	-1.1
1,588,175	+		CCNA_01479	0.87	-0.2
1,588,175	+		CCNA_01479	0.87	-0.3
1,588,190	+		CCNA_01479	0.88	+0.1
1,588,198	-		CCNA_01479	0.88	-0.2
1,588,200	+		CCNA_01479	0.88	-0.3
1,588,237	+		CCNA_01479	0.90	+0.7
1,588,281	+				-1.0
1,588,289	-				+1.6
1,588,297	-				-2.4
1,588,308	-				-1.1
1,588,330	-				-2.3
1,588,335	+				-0.1
1,588,379	+				-0.4
1,588,410	+				+0.5
1,588,429	-				-2.2
1,588,433	+				+0.8
1,588,441	-				-0.1
1,588,573	-		CCNA_01480	0.32	-2.9
1,588,666	+		CCNA_01480	0.55	+0.7
1,588,674	-		CCNA_01480	0.57	+0.1
1,588,744	-		CCNA_01480	0.74	-0.4
1,588,763	+		CCNA_01480	0.79	+0.4
1,588,763	+		CCNA_01480	0.79	+1.0
1,588,763	+		CCNA_01480	0.79	-0.5
1,588,769	-		CCNA_01480	0.80	-0.5
1,588,771	-		CCNA_01480	0.81	-2.4
1,588,843	+				+1.1
1,588,858	+				+0.5
1,588,912	+				+0.1
1,588,912	+				+1.3
1,588,912	+				+1.8
1,588,912	+				+0.1
1,588,920	-				-0.8
1,588,920	-				-1.0
1,588,920	-				-1.6
1,588,978	+				+0.0
1,588,978	+				+0.6
1,588,978	-				-1.4
1,589,007	-				-0.6
1,589,019	+				+0.4
1,589,027	-				-1.7
1,589,038	+		CCNA_01481	0.10	+0.1
1,589,041	-		CCNA_01481	0.10	-0.7
1,589,088	+		CCNA_01481	0.13	+0.2
1,589,096	-		CCNA_01481	0.14	+0.4
1,589,195	-		CCNA_01481	0.19	-0.5
1,589,198	-		CCNA_01481	0.19	+0.2
1,589,236	+		CCNA_01481	0.22	+2.2
1,589,244	-		CCNA_01481	0.22	-1.4
1,589,266	+		CCNA_01481	0.23	+1.6
1,589,290	+		CCNA_01481	0.25	+0.5
1,589,376	+		CCNA_01481	0.30	+0.4
1,589,383	+		CCNA_01481	0.30	+1.5
1,589,383	+		CCNA_01481	0.30	+1.0
1,589,383	+		CCNA_01481	0.30	+0.9
1,589,383	+		CCNA_01481	0.30	+0.8
1,589,383	+		CCNA_01481	0.30	+0.5
1,589,391	-		CCNA_01481	0.31	-2.7
1,589,391	-		CCNA_01481	0.31	-2.2
1,589,391	-		CCNA_01481	0.31	+1.0
1,589,391	-		CCNA_01481	0.31	-1.6
1,589,409	+		CCNA_01481	0.32	-0.2
1,589,426	+		CCNA_01481	0.33	-0.4
1,589,426	+		CCNA_01481	0.33	+0.7
1,589,427	-		CCNA_01481	0.33	+0.4
1,589,434	-		CCNA_01481	0.33	-1.6