Experiment: PYE with sodium fluoride 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01281 and CCNA_01282 are separated by 70 nucleotides CCNA_01282 and CCNA_01283 overlap by 94 nucleotides
CCNA_01281: CCNA_01281 - glycerol kinase, at 1,407,064 to 1,408,554
_01281
CCNA_01282: CCNA_01282 - gluconolactonase, at 1,408,625 to 1,409,668
_01282
CCNA_01283: CCNA_01283 - NADP-dependent aldose oxidoreductase, at 1,409,575 to 1,410,771
_01283
CCNA_01284: CCNA_01284 - dienelactone hydrolase family protein, at 1,410,657 to 1,411,604
_01284
Position (kb)
1408
1409
1410 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1407.646 kb on + strand, within CCNA_01281 at 1407.654 kb on - strand, within CCNA_01281 at 1407.678 kb on + strand, within CCNA_01281 at 1407.685 kb on - strand, within CCNA_01281 at 1407.686 kb on - strand, within CCNA_01281 at 1407.709 kb on + strand, within CCNA_01281 at 1407.709 kb on + strand, within CCNA_01281 at 1407.709 kb on + strand, within CCNA_01281 at 1407.709 kb on + strand, within CCNA_01281 at 1407.717 kb on - strand, within CCNA_01281 at 1407.717 kb on - strand, within CCNA_01281 at 1407.717 kb on - strand, within CCNA_01281 at 1407.717 kb on - strand, within CCNA_01281 at 1407.717 kb on - strand, within CCNA_01281 at 1407.810 kb on - strand, within CCNA_01281 at 1407.810 kb on - strand, within CCNA_01281 at 1407.811 kb on + strand, within CCNA_01281 at 1407.829 kb on - strand, within CCNA_01281 at 1407.837 kb on + strand, within CCNA_01281 at 1407.837 kb on + strand, within CCNA_01281 at 1407.837 kb on + strand, within CCNA_01281 at 1407.845 kb on - strand, within CCNA_01281 at 1407.845 kb on - strand, within CCNA_01281 at 1407.847 kb on + strand, within CCNA_01281 at 1407.863 kb on + strand, within CCNA_01281 at 1407.873 kb on + strand, within CCNA_01281 at 1407.936 kb on + strand, within CCNA_01281 at 1407.983 kb on - strand, within CCNA_01281 at 1408.013 kb on - strand, within CCNA_01281 at 1408.053 kb on + strand, within CCNA_01281 at 1408.053 kb on + strand, within CCNA_01281 at 1408.061 kb on - strand, within CCNA_01281 at 1408.148 kb on - strand, within CCNA_01281 at 1408.166 kb on + strand, within CCNA_01281 at 1408.166 kb on + strand, within CCNA_01281 at 1408.174 kb on - strand, within CCNA_01281 at 1408.174 kb on - strand, within CCNA_01281 at 1408.174 kb on - strand, within CCNA_01281 at 1408.176 kb on + strand, within CCNA_01281 at 1408.213 kb on - strand, within CCNA_01281 at 1408.220 kb on + strand, within CCNA_01281 at 1408.221 kb on - strand, within CCNA_01281 at 1408.228 kb on - strand, within CCNA_01281 at 1408.230 kb on + strand, within CCNA_01281 at 1408.230 kb on + strand at 1408.310 kb on - strand, within CCNA_01281 at 1408.316 kb on + strand, within CCNA_01281 at 1408.374 kb on + strand, within CCNA_01281 at 1408.384 kb on + strand, within CCNA_01281 at 1408.384 kb on + strand, within CCNA_01281 at 1408.392 kb on - strand, within CCNA_01281 at 1408.420 kb on + strand at 1408.428 kb on - strand at 1408.428 kb on - strand at 1408.452 kb on + strand at 1408.482 kb on + strand at 1408.519 kb on + strand at 1408.523 kb on + strand at 1408.537 kb on - strand at 1408.554 kb on + strand at 1408.555 kb on - strand at 1408.640 kb on + strand at 1408.648 kb on - strand at 1408.699 kb on - strand at 1408.701 kb on - strand at 1408.704 kb on - strand at 1408.817 kb on + strand, within CCNA_01282 at 1408.852 kb on - strand, within CCNA_01282 at 1408.860 kb on - strand, within CCNA_01282 at 1408.882 kb on - strand, within CCNA_01282 at 1408.940 kb on - strand, within CCNA_01282 at 1408.946 kb on + strand, within CCNA_01282 at 1408.963 kb on + strand, within CCNA_01282 at 1409.003 kb on + strand, within CCNA_01282 at 1409.082 kb on - strand, within CCNA_01282 at 1409.089 kb on - strand, within CCNA_01282 at 1409.096 kb on + strand, within CCNA_01282 at 1409.096 kb on + strand, within CCNA_01282 at 1409.106 kb on + strand, within CCNA_01282 at 1409.119 kb on + strand, within CCNA_01282 at 1409.138 kb on + strand, within CCNA_01282 at 1409.163 kb on - strand, within CCNA_01282 at 1409.171 kb on + strand, within CCNA_01282 at 1409.203 kb on + strand, within CCNA_01282 at 1409.210 kb on + strand, within CCNA_01282 at 1409.281 kb on - strand, within CCNA_01282 at 1409.291 kb on - strand, within CCNA_01282 at 1409.321 kb on - strand, within CCNA_01282 at 1409.364 kb on + strand, within CCNA_01282 at 1409.364 kb on + strand, within CCNA_01282 at 1409.371 kb on - strand at 1409.372 kb on - strand, within CCNA_01282 at 1409.372 kb on - strand, within CCNA_01282 at 1409.418 kb on + strand, within CCNA_01282 at 1409.426 kb on - strand, within CCNA_01282 at 1409.436 kb on - strand, within CCNA_01282 at 1409.480 kb on + strand, within CCNA_01282 at 1409.613 kb on + strand at 1409.613 kb on + strand at 1409.613 kb on + strand at 1409.715 kb on - strand, within CCNA_01283 at 1409.736 kb on - strand, within CCNA_01283 at 1409.744 kb on - strand, within CCNA_01283 at 1409.762 kb on + strand, within CCNA_01283 at 1409.775 kb on - strand, within CCNA_01283 at 1409.796 kb on - strand, within CCNA_01283 at 1409.865 kb on - strand, within CCNA_01283 at 1409.909 kb on + strand, within CCNA_01283 at 1409.921 kb on - strand, within CCNA_01283 at 1409.986 kb on - strand, within CCNA_01283 at 1409.987 kb on - strand, within CCNA_01283 at 1410.012 kb on + strand, within CCNA_01283 at 1410.036 kb on + strand, within CCNA_01283 at 1410.119 kb on - strand, within CCNA_01283 at 1410.177 kb on + strand, within CCNA_01283 at 1410.185 kb on - strand, within CCNA_01283 at 1410.265 kb on + strand at 1410.273 kb on - strand, within CCNA_01283 at 1410.273 kb on - strand, within CCNA_01283 at 1410.273 kb on - strand, within CCNA_01283 at 1410.273 kb on - strand, within CCNA_01283 at 1410.296 kb on + strand, within CCNA_01283 at 1410.363 kb on + strand, within CCNA_01283 at 1410.370 kb on + strand, within CCNA_01283 at 1410.387 kb on - strand, within CCNA_01283 at 1410.397 kb on - strand, within CCNA_01283 at 1410.420 kb on - strand, within CCNA_01283 at 1410.519 kb on + strand, within CCNA_01283 at 1410.520 kb on - strand, within CCNA_01283 at 1410.527 kb on - strand, within CCNA_01283 at 1410.561 kb on + strand, within CCNA_01283 at 1410.561 kb on + strand, within CCNA_01283 at 1410.563 kb on - strand, within CCNA_01283 at 1410.569 kb on + strand, within CCNA_01283 at 1410.627 kb on + strand, within CCNA_01283 at 1410.635 kb on - strand, within CCNA_01283 at 1410.651 kb on + strand, within CCNA_01283
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with sodium fluoride 7.5 mM remove 1,407,646 + CCNA_01281 0.39 +0.9 1,407,654 - CCNA_01281 0.40 -2.4 1,407,678 + CCNA_01281 0.41 -0.9 1,407,685 - CCNA_01281 0.42 -0.4 1,407,686 - CCNA_01281 0.42 +0.5 1,407,709 + CCNA_01281 0.43 -0.7 1,407,709 + CCNA_01281 0.43 -0.4 1,407,709 + CCNA_01281 0.43 +0.6 1,407,709 + CCNA_01281 0.43 -1.4 1,407,717 - CCNA_01281 0.44 +0.6 1,407,717 - CCNA_01281 0.44 -1.2 1,407,717 - CCNA_01281 0.44 -1.2 1,407,717 - CCNA_01281 0.44 -0.9 1,407,717 - CCNA_01281 0.44 +0.2 1,407,810 - CCNA_01281 0.50 -0.9 1,407,810 - CCNA_01281 0.50 -0.5 1,407,811 + CCNA_01281 0.50 +1.7 1,407,829 - CCNA_01281 0.51 -1.9 1,407,837 + CCNA_01281 0.52 -1.1 1,407,837 + CCNA_01281 0.52 +3.2 1,407,837 + CCNA_01281 0.52 +0.1 1,407,845 - CCNA_01281 0.52 -0.6 1,407,845 - CCNA_01281 0.52 -0.5 1,407,847 + CCNA_01281 0.53 -0.5 1,407,863 + CCNA_01281 0.54 -0.5 1,407,873 + CCNA_01281 0.54 +0.3 1,407,936 + CCNA_01281 0.58 +1.1 1,407,983 - CCNA_01281 0.62 +0.5 1,408,013 - CCNA_01281 0.64 -0.4 1,408,053 + CCNA_01281 0.66 -1.3 1,408,053 + CCNA_01281 0.66 -0.5 1,408,061 - CCNA_01281 0.67 -3.3 1,408,148 - CCNA_01281 0.73 -0.9 1,408,166 + CCNA_01281 0.74 -0.2 1,408,166 + CCNA_01281 0.74 -0.2 1,408,174 - CCNA_01281 0.74 -0.5 1,408,174 - CCNA_01281 0.74 -0.6 1,408,174 - CCNA_01281 0.74 -0.1 1,408,176 + CCNA_01281 0.75 -1.0 1,408,213 - CCNA_01281 0.77 -0.2 1,408,220 + CCNA_01281 0.78 +0.2 1,408,221 - CCNA_01281 0.78 -0.9 1,408,228 - CCNA_01281 0.78 -2.1 1,408,230 + CCNA_01281 0.78 -1.4 1,408,230 + -0.0 1,408,310 - CCNA_01281 0.84 -0.3 1,408,316 + CCNA_01281 0.84 -0.2 1,408,374 + CCNA_01281 0.88 +1.0 1,408,384 + CCNA_01281 0.89 +0.3 1,408,384 + CCNA_01281 0.89 -0.9 1,408,392 - CCNA_01281 0.89 +0.3 1,408,420 + -0.2 1,408,428 - -1.1 1,408,428 - +1.5 1,408,452 + -1.2 1,408,482 + +0.0 1,408,519 + -1.6 1,408,523 + +0.4 1,408,537 - -0.6 1,408,554 + -0.4 1,408,555 - -2.0 1,408,640 + -0.2 1,408,648 - +0.0 1,408,699 - +1.8 1,408,701 - -1.1 1,408,704 - -1.8 1,408,817 + CCNA_01282 0.18 -0.0 1,408,852 - CCNA_01282 0.22 -1.9 1,408,860 - CCNA_01282 0.23 -1.1 1,408,882 - CCNA_01282 0.25 -1.7 1,408,940 - CCNA_01282 0.30 +0.2 1,408,946 + CCNA_01282 0.31 -1.1 1,408,963 + CCNA_01282 0.32 +1.0 1,409,003 + CCNA_01282 0.36 -1.0 1,409,082 - CCNA_01282 0.44 +0.1 1,409,089 - CCNA_01282 0.44 -0.3 1,409,096 + CCNA_01282 0.45 -1.7 1,409,096 + CCNA_01282 0.45 +1.3 1,409,106 + CCNA_01282 0.46 -0.9 1,409,119 + CCNA_01282 0.47 -1.8 1,409,138 + CCNA_01282 0.49 +0.8 1,409,163 - CCNA_01282 0.52 -1.1 1,409,171 + CCNA_01282 0.52 +1.8 1,409,203 + CCNA_01282 0.55 -1.2 1,409,210 + CCNA_01282 0.56 -1.2 1,409,281 - CCNA_01282 0.63 -0.9 1,409,291 - CCNA_01282 0.64 -2.3 1,409,321 - CCNA_01282 0.67 -2.4 1,409,364 + CCNA_01282 0.71 +0.2 1,409,364 + CCNA_01282 0.71 -0.2 1,409,371 - +0.4 1,409,372 - CCNA_01282 0.72 -1.2 1,409,372 - CCNA_01282 0.72 -2.0 1,409,418 + CCNA_01282 0.76 -0.1 1,409,426 - CCNA_01282 0.77 -0.8 1,409,436 - CCNA_01282 0.78 -0.9 1,409,480 + CCNA_01282 0.82 -0.0 1,409,613 + -0.9 1,409,613 + +0.3 1,409,613 + -3.3 1,409,715 - CCNA_01283 0.12 -1.3 1,409,736 - CCNA_01283 0.13 -2.1 1,409,744 - CCNA_01283 0.14 -1.1 1,409,762 + CCNA_01283 0.16 +0.8 1,409,775 - CCNA_01283 0.17 +1.0 1,409,796 - CCNA_01283 0.18 -1.6 1,409,865 - CCNA_01283 0.24 -0.5 1,409,909 + CCNA_01283 0.28 -0.7 1,409,921 - CCNA_01283 0.29 -1.1 1,409,986 - CCNA_01283 0.34 +0.2 1,409,987 - CCNA_01283 0.34 -2.5 1,410,012 + CCNA_01283 0.37 -2.1 1,410,036 + CCNA_01283 0.39 -2.5 1,410,119 - CCNA_01283 0.45 -0.8 1,410,177 + CCNA_01283 0.50 +0.0 1,410,185 - CCNA_01283 0.51 -1.1 1,410,265 + +2.8 1,410,273 - CCNA_01283 0.58 +0.3 1,410,273 - CCNA_01283 0.58 -0.2 1,410,273 - CCNA_01283 0.58 -1.0 1,410,273 - CCNA_01283 0.58 -0.6 1,410,296 + CCNA_01283 0.60 -1.7 1,410,363 + CCNA_01283 0.66 -1.5 1,410,370 + CCNA_01283 0.66 -0.9 1,410,387 - CCNA_01283 0.68 -2.4 1,410,397 - CCNA_01283 0.69 -0.0 1,410,420 - CCNA_01283 0.71 -0.2 1,410,519 + CCNA_01283 0.79 -0.8 1,410,520 - CCNA_01283 0.79 -0.5 1,410,527 - CCNA_01283 0.80 -3.1 1,410,561 + CCNA_01283 0.82 -2.8 1,410,561 + CCNA_01283 0.82 +0.6 1,410,563 - CCNA_01283 0.83 -0.3 1,410,569 + CCNA_01283 0.83 -0.6 1,410,627 + CCNA_01283 0.88 +0.1 1,410,635 - CCNA_01283 0.89 +0.4 1,410,651 + CCNA_01283 0.90 +0.8
Or see this region's nucleotide sequence