Experiment: PYE with sodium fluoride 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00653 and CCNA_00654 overlap by 11 nucleotides CCNA_00654 and CCNA_00655 are separated by 288 nucleotides
CCNA_00653: CCNA_00653 - Nitrate reductase (EC 1.7.99.4) <small>(from data)</small>, at 704,586 to 707,264
_00653
CCNA_00654: CCNA_00654 - uroporphyrin-III C-methyltransferase, at 707,254 to 708,039
_00654
CCNA_00655: CCNA_00655 - hypothetical protein, at 708,328 to 710,310
_00655
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 706.340 kb on + strand, within CCNA_00653 at 706.346 kb on - strand, within CCNA_00653 at 706.346 kb on - strand, within CCNA_00653 at 706.346 kb on - strand, within CCNA_00653 at 706.348 kb on - strand, within CCNA_00653 at 706.382 kb on - strand, within CCNA_00653 at 706.382 kb on - strand, within CCNA_00653 at 706.387 kb on - strand, within CCNA_00653 at 706.406 kb on + strand, within CCNA_00653 at 706.414 kb on - strand, within CCNA_00653 at 706.424 kb on + strand, within CCNA_00653 at 706.484 kb on + strand, within CCNA_00653 at 706.484 kb on + strand, within CCNA_00653 at 706.487 kb on - strand, within CCNA_00653 at 706.487 kb on - strand, within CCNA_00653 at 706.490 kb on + strand, within CCNA_00653 at 706.490 kb on + strand, within CCNA_00653 at 706.492 kb on - strand, within CCNA_00653 at 706.525 kb on - strand, within CCNA_00653 at 706.559 kb on + strand, within CCNA_00653 at 706.559 kb on + strand, within CCNA_00653 at 706.567 kb on - strand, within CCNA_00653 at 706.567 kb on - strand, within CCNA_00653 at 706.579 kb on - strand, within CCNA_00653 at 706.610 kb on + strand, within CCNA_00653 at 706.611 kb on + strand, within CCNA_00653 at 706.612 kb on - strand, within CCNA_00653 at 706.612 kb on - strand at 706.632 kb on + strand, within CCNA_00653 at 706.639 kb on + strand, within CCNA_00653 at 706.647 kb on - strand, within CCNA_00653 at 706.649 kb on + strand, within CCNA_00653 at 706.655 kb on + strand, within CCNA_00653 at 706.662 kb on - strand, within CCNA_00653 at 706.671 kb on + strand, within CCNA_00653 at 706.676 kb on + strand, within CCNA_00653 at 706.696 kb on + strand, within CCNA_00653 at 706.704 kb on + strand, within CCNA_00653 at 706.731 kb on - strand, within CCNA_00653 at 706.771 kb on - strand, within CCNA_00653 at 706.847 kb on - strand, within CCNA_00653 at 706.901 kb on + strand, within CCNA_00653 at 706.908 kb on + strand, within CCNA_00653 at 706.916 kb on - strand, within CCNA_00653 at 706.921 kb on + strand, within CCNA_00653 at 706.921 kb on + strand, within CCNA_00653 at 706.921 kb on + strand, within CCNA_00653 at 706.929 kb on - strand, within CCNA_00653 at 706.929 kb on - strand, within CCNA_00653 at 706.946 kb on - strand, within CCNA_00653 at 706.951 kb on - strand, within CCNA_00653 at 706.951 kb on - strand, within CCNA_00653 at 706.951 kb on - strand, within CCNA_00653 at 707.028 kb on + strand at 707.028 kb on + strand at 707.028 kb on + strand at 707.078 kb on + strand at 707.083 kb on + strand at 707.096 kb on + strand at 707.097 kb on - strand at 707.097 kb on - strand at 707.097 kb on - strand at 707.183 kb on - strand at 707.197 kb on + strand at 707.202 kb on + strand at 707.210 kb on - strand at 707.248 kb on + strand at 707.256 kb on + strand at 707.258 kb on + strand at 707.264 kb on - strand at 707.266 kb on - strand at 707.283 kb on - strand at 707.288 kb on - strand at 707.292 kb on - strand at 707.305 kb on + strand at 707.326 kb on + strand at 707.342 kb on + strand, within CCNA_00654 at 707.344 kb on + strand, within CCNA_00654 at 707.344 kb on + strand, within CCNA_00654 at 707.344 kb on + strand, within CCNA_00654 at 707.344 kb on + strand, within CCNA_00654 at 707.344 kb on + strand, within CCNA_00654 at 707.344 kb on + strand, within CCNA_00654 at 707.346 kb on + strand, within CCNA_00654 at 707.352 kb on + strand, within CCNA_00654 at 707.352 kb on - strand, within CCNA_00654 at 707.352 kb on - strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.381 kb on + strand, within CCNA_00654 at 707.381 kb on + strand, within CCNA_00654 at 707.381 kb on + strand, within CCNA_00654 at 707.381 kb on + strand, within CCNA_00654 at 707.387 kb on - strand, within CCNA_00654 at 707.389 kb on - strand, within CCNA_00654 at 707.389 kb on - strand, within CCNA_00654 at 707.389 kb on - strand, within CCNA_00654 at 707.432 kb on - strand, within CCNA_00654 at 707.454 kb on - strand, within CCNA_00654 at 707.506 kb on + strand, within CCNA_00654 at 707.529 kb on + strand, within CCNA_00654 at 707.577 kb on + strand, within CCNA_00654 at 707.585 kb on - strand, within CCNA_00654 at 707.641 kb on + strand, within CCNA_00654 at 707.666 kb on + strand, within CCNA_00654 at 707.679 kb on - strand, within CCNA_00654 at 707.689 kb on + strand, within CCNA_00654 at 707.699 kb on - strand, within CCNA_00654 at 707.706 kb on + strand, within CCNA_00654 at 707.733 kb on - strand, within CCNA_00654 at 707.736 kb on + strand, within CCNA_00654 at 707.755 kb on + strand, within CCNA_00654 at 707.780 kb on - strand, within CCNA_00654 at 707.822 kb on - strand, within CCNA_00654 at 707.843 kb on - strand, within CCNA_00654 at 707.881 kb on + strand, within CCNA_00654 at 707.884 kb on - strand, within CCNA_00654 at 707.912 kb on + strand, within CCNA_00654 at 707.912 kb on + strand, within CCNA_00654 at 707.912 kb on + strand, within CCNA_00654 at 707.912 kb on + strand, within CCNA_00654 at 707.912 kb on + strand at 707.912 kb on + strand, within CCNA_00654 at 707.912 kb on + strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.930 kb on - strand, within CCNA_00654 at 707.934 kb on + strand, within CCNA_00654 at 707.942 kb on - strand, within CCNA_00654 at 707.944 kb on - strand, within CCNA_00654 at 708.006 kb on - strand at 708.041 kb on - strand at 708.048 kb on - strand at 708.055 kb on + strand at 708.081 kb on - strand at 708.162 kb on + strand at 708.162 kb on + strand at 708.171 kb on - strand at 708.178 kb on + strand at 708.191 kb on - strand at 708.200 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.210 kb on - strand at 708.210 kb on - strand at 708.250 kb on - strand at 708.262 kb on + strand at 708.262 kb on + strand at 708.269 kb on + strand at 708.269 kb on + strand at 708.269 kb on + strand at 708.269 kb on + strand at 708.275 kb on - strand at 708.277 kb on - strand at 708.279 kb on + strand at 708.301 kb on + strand at 708.301 kb on + strand at 708.301 kb on + strand at 708.301 kb on + strand at 708.301 kb on + strand at 708.301 kb on + strand at 708.301 kb on + strand at 708.309 kb on - strand at 708.309 kb on - strand at 708.309 kb on - strand at 708.320 kb on + strand at 708.326 kb on + strand at 708.326 kb on + strand at 708.326 kb on + strand at 708.334 kb on - strand at 708.337 kb on + strand at 708.357 kb on - strand at 708.427 kb on + strand at 708.427 kb on + strand at 708.427 kb on + strand at 708.427 kb on + strand at 708.427 kb on + strand at 708.435 kb on - strand at 708.435 kb on - strand at 708.435 kb on - strand at 708.435 kb on - strand at 708.517 kb on - strand at 708.531 kb on + strand, within CCNA_00655 at 708.534 kb on - strand, within CCNA_00655 at 708.556 kb on - strand, within CCNA_00655 at 708.601 kb on - strand, within CCNA_00655 at 708.601 kb on - strand, within CCNA_00655 at 708.601 kb on - strand, within CCNA_00655 at 708.601 kb on - strand, within CCNA_00655 at 708.713 kb on - strand, within CCNA_00655 at 708.944 kb on - strand, within CCNA_00655 at 708.945 kb on + strand, within CCNA_00655 at 708.948 kb on - strand, within CCNA_00655 at 709.016 kb on - strand, within CCNA_00655
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with sodium fluoride 7.5 mM remove 706,340 + CCNA_00653 0.65 +0.5 706,346 - CCNA_00653 0.66 -0.6 706,346 - CCNA_00653 0.66 -1.0 706,346 - CCNA_00653 0.66 -0.6 706,348 - CCNA_00653 0.66 -0.4 706,382 - CCNA_00653 0.67 -0.7 706,382 - CCNA_00653 0.67 +1.1 706,387 - CCNA_00653 0.67 +2.2 706,406 + CCNA_00653 0.68 +0.6 706,414 - CCNA_00653 0.68 -0.4 706,424 + CCNA_00653 0.69 +0.7 706,484 + CCNA_00653 0.71 +0.3 706,484 + CCNA_00653 0.71 -0.8 706,487 - CCNA_00653 0.71 -0.1 706,487 - CCNA_00653 0.71 -1.1 706,490 + CCNA_00653 0.71 -0.4 706,490 + CCNA_00653 0.71 +1.1 706,492 - CCNA_00653 0.71 +0.6 706,525 - CCNA_00653 0.72 +0.9 706,559 + CCNA_00653 0.74 -0.7 706,559 + CCNA_00653 0.74 -1.1 706,567 - CCNA_00653 0.74 +0.6 706,567 - CCNA_00653 0.74 -0.0 706,579 - CCNA_00653 0.74 -0.1 706,610 + CCNA_00653 0.76 +0.9 706,611 + CCNA_00653 0.76 -0.3 706,612 - CCNA_00653 0.76 -0.1 706,612 - -0.1 706,632 + CCNA_00653 0.76 -0.5 706,639 + CCNA_00653 0.77 -0.7 706,647 - CCNA_00653 0.77 +0.3 706,649 + CCNA_00653 0.77 +0.9 706,655 + CCNA_00653 0.77 +0.2 706,662 - CCNA_00653 0.77 -0.2 706,671 + CCNA_00653 0.78 +1.9 706,676 + CCNA_00653 0.78 -0.1 706,696 + CCNA_00653 0.79 +0.5 706,704 + CCNA_00653 0.79 -0.3 706,731 - CCNA_00653 0.80 -0.5 706,771 - CCNA_00653 0.82 +0.6 706,847 - CCNA_00653 0.84 -0.3 706,901 + CCNA_00653 0.86 -0.2 706,908 + CCNA_00653 0.87 -0.1 706,916 - CCNA_00653 0.87 -0.8 706,921 + CCNA_00653 0.87 +1.0 706,921 + CCNA_00653 0.87 -0.3 706,921 + CCNA_00653 0.87 -1.5 706,929 - CCNA_00653 0.87 -2.3 706,929 - CCNA_00653 0.87 +1.3 706,946 - CCNA_00653 0.88 -0.8 706,951 - CCNA_00653 0.88 -1.4 706,951 - CCNA_00653 0.88 -0.9 706,951 - CCNA_00653 0.88 -0.7 707,028 + -0.7 707,028 + +0.7 707,028 + -0.4 707,078 + -1.3 707,083 + -0.2 707,096 + -1.1 707,097 - +0.4 707,097 - +0.7 707,097 - +1.7 707,183 - -1.1 707,197 + -0.1 707,202 + -0.8 707,210 - +1.5 707,248 + -0.3 707,256 + +1.5 707,258 + -1.2 707,264 - -1.4 707,266 - -2.0 707,283 - +0.4 707,288 - -0.9 707,292 - +1.8 707,305 + -0.7 707,326 + -0.6 707,342 + CCNA_00654 0.11 -2.4 707,344 + CCNA_00654 0.11 +0.5 707,344 + CCNA_00654 0.11 -0.9 707,344 + CCNA_00654 0.11 -0.7 707,344 + CCNA_00654 0.11 -1.1 707,344 + CCNA_00654 0.11 -0.8 707,344 + CCNA_00654 0.11 -0.5 707,346 + CCNA_00654 0.12 +0.3 707,352 + CCNA_00654 0.12 -1.7 707,352 - CCNA_00654 0.12 +0.6 707,352 - CCNA_00654 0.12 +1.6 707,362 + CCNA_00654 0.14 -1.1 707,362 + CCNA_00654 0.14 +0.3 707,362 + CCNA_00654 0.14 -0.5 707,362 + CCNA_00654 0.14 -0.9 707,362 + CCNA_00654 0.14 -2.0 707,362 + CCNA_00654 0.14 -0.4 707,362 + CCNA_00654 0.14 -0.9 707,362 + CCNA_00654 0.14 -1.9 707,362 + CCNA_00654 0.14 -0.1 707,362 + CCNA_00654 0.14 -0.4 707,362 + CCNA_00654 0.14 +0.3 707,362 + CCNA_00654 0.14 +1.6 707,362 + CCNA_00654 0.14 -2.1 707,362 - CCNA_00654 0.14 -0.7 707,370 - CCNA_00654 0.15 +1.3 707,370 - CCNA_00654 0.15 +0.3 707,370 - CCNA_00654 0.15 -1.5 707,370 - CCNA_00654 0.15 -1.2 707,370 - CCNA_00654 0.15 -1.9 707,370 - CCNA_00654 0.15 -0.3 707,370 - CCNA_00654 0.15 -2.2 707,370 - CCNA_00654 0.15 -1.8 707,370 - CCNA_00654 0.15 -2.2 707,381 + CCNA_00654 0.16 -0.2 707,381 + CCNA_00654 0.16 +1.0 707,381 + CCNA_00654 0.16 +0.5 707,381 + CCNA_00654 0.16 -0.9 707,387 - CCNA_00654 0.17 -0.4 707,389 - CCNA_00654 0.17 -2.0 707,389 - CCNA_00654 0.17 +0.6 707,389 - CCNA_00654 0.17 -1.7 707,432 - CCNA_00654 0.23 -1.9 707,454 - CCNA_00654 0.25 -0.5 707,506 + CCNA_00654 0.32 +0.4 707,529 + CCNA_00654 0.35 +0.5 707,577 + CCNA_00654 0.41 -0.6 707,585 - CCNA_00654 0.42 -1.6 707,641 + CCNA_00654 0.49 -0.7 707,666 + CCNA_00654 0.52 +0.3 707,679 - CCNA_00654 0.54 -0.4 707,689 + CCNA_00654 0.55 -0.2 707,699 - CCNA_00654 0.57 -1.7 707,706 + CCNA_00654 0.58 -2.2 707,733 - CCNA_00654 0.61 -2.1 707,736 + CCNA_00654 0.61 -0.4 707,755 + CCNA_00654 0.64 +0.3 707,780 - CCNA_00654 0.67 -0.3 707,822 - CCNA_00654 0.72 -0.2 707,843 - CCNA_00654 0.75 -0.5 707,881 + CCNA_00654 0.80 -0.8 707,884 - CCNA_00654 0.80 -0.0 707,912 + CCNA_00654 0.84 -0.6 707,912 + CCNA_00654 0.84 -0.5 707,912 + CCNA_00654 0.84 -0.1 707,912 + CCNA_00654 0.84 -1.3 707,912 + +2.9 707,912 + CCNA_00654 0.84 -0.3 707,912 + CCNA_00654 0.84 -0.9 707,920 - CCNA_00654 0.85 -0.1 707,920 - CCNA_00654 0.85 -1.7 707,920 - CCNA_00654 0.85 -2.7 707,920 - CCNA_00654 0.85 -1.1 707,920 - CCNA_00654 0.85 -1.9 707,920 - CCNA_00654 0.85 +2.3 707,920 - CCNA_00654 0.85 -2.4 707,930 - CCNA_00654 0.86 -0.5 707,934 + CCNA_00654 0.87 -0.6 707,942 - CCNA_00654 0.88 -0.8 707,944 - CCNA_00654 0.88 -1.3 708,006 - -1.0 708,041 - -0.7 708,048 - -1.5 708,055 + +0.2 708,081 - -0.7 708,162 + +0.3 708,162 + -0.0 708,171 - -1.8 708,178 + -0.3 708,191 - -2.0 708,200 + +0.7 708,202 + -0.3 708,202 + -0.5 708,202 + -0.4 708,202 + +0.5 708,202 + +0.6 708,202 + -1.5 708,202 + +2.4 708,202 + +0.2 708,202 + +0.1 708,210 - -0.4 708,210 - +0.0 708,250 - -0.2 708,262 + +0.6 708,262 + +0.6 708,269 + -1.0 708,269 + +1.0 708,269 + +0.5 708,269 + +0.2 708,275 - -0.9 708,277 - +0.9 708,279 + +0.5 708,301 + +0.2 708,301 + -1.8 708,301 + +0.2 708,301 + +0.2 708,301 + +0.8 708,301 + +1.3 708,301 + +1.0 708,309 - -1.5 708,309 - +0.1 708,309 - +0.1 708,320 + +0.5 708,326 + -0.4 708,326 + -0.4 708,326 + +0.3 708,334 - -1.1 708,337 + -0.3 708,357 - -0.8 708,427 + +0.6 708,427 + -0.1 708,427 + -0.8 708,427 + -2.4 708,427 + +0.1 708,435 - +0.1 708,435 - -0.4 708,435 - +1.6 708,435 - -0.9 708,517 - +2.3 708,531 + CCNA_00655 0.10 -1.1 708,534 - CCNA_00655 0.10 -1.9 708,556 - CCNA_00655 0.11 -0.9 708,601 - CCNA_00655 0.14 -0.3 708,601 - CCNA_00655 0.14 +1.3 708,601 - CCNA_00655 0.14 -0.8 708,601 - CCNA_00655 0.14 -0.1 708,713 - CCNA_00655 0.19 -0.0 708,944 - CCNA_00655 0.31 -0.6 708,945 + CCNA_00655 0.31 -0.0 708,948 - CCNA_00655 0.31 -1.5 709,016 - CCNA_00655 0.35 -2.3
Or see this region's nucleotide sequence