Experiment: PYE with sodium fluoride 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00639 and CCNA_00640 are separated by 145 nucleotides CCNA_00640 and CCNA_00641 are separated by 203 nucleotides CCNA_00641 and CCNA_00642 overlap by 31 nucleotides
CCNA_00639: CCNA_00639 - heme:hemopexin-binding protein, at 690,126 to 691,751
_00639
CCNA_00640: CCNA_00640 - hypothetical protein, at 691,897 to 692,172
_00640
CCNA_00641: CCNA_00641 - hypothetical protein, at 692,376 to 692,672
_00641
CCNA_00642: CCNA_00642 - hypothetical protein, at 692,642 to 692,899
_00642
Position (kb) 691
692
693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 690.902 kb on - strand, within CCNA_00639 at 690.902 kb on - strand, within CCNA_00639 at 690.902 kb on - strand, within CCNA_00639 at 690.902 kb on - strand, within CCNA_00639 at 690.902 kb on - strand, within CCNA_00639 at 690.902 kb on - strand, within CCNA_00639 at 690.904 kb on + strand, within CCNA_00639 at 690.913 kb on - strand, within CCNA_00639 at 690.919 kb on + strand at 690.968 kb on - strand, within CCNA_00639 at 690.973 kb on - strand, within CCNA_00639 at 691.012 kb on + strand, within CCNA_00639 at 691.012 kb on + strand, within CCNA_00639 at 691.034 kb on - strand, within CCNA_00639 at 691.045 kb on - strand, within CCNA_00639 at 691.045 kb on - strand, within CCNA_00639 at 691.071 kb on + strand, within CCNA_00639 at 691.083 kb on + strand, within CCNA_00639 at 691.120 kb on - strand, within CCNA_00639 at 691.120 kb on - strand, within CCNA_00639 at 691.125 kb on + strand, within CCNA_00639 at 691.125 kb on + strand, within CCNA_00639 at 691.133 kb on - strand, within CCNA_00639 at 691.133 kb on - strand, within CCNA_00639 at 691.133 kb on - strand, within CCNA_00639 at 691.150 kb on - strand, within CCNA_00639 at 691.205 kb on + strand, within CCNA_00639 at 691.218 kb on - strand, within CCNA_00639 at 691.238 kb on + strand, within CCNA_00639 at 691.238 kb on + strand, within CCNA_00639 at 691.302 kb on - strand, within CCNA_00639 at 691.302 kb on - strand, within CCNA_00639 at 691.364 kb on - strand, within CCNA_00639 at 691.400 kb on - strand, within CCNA_00639 at 691.413 kb on + strand, within CCNA_00639 at 691.421 kb on - strand, within CCNA_00639 at 691.421 kb on - strand, within CCNA_00639 at 691.439 kb on - strand, within CCNA_00639 at 691.458 kb on + strand, within CCNA_00639 at 691.466 kb on - strand, within CCNA_00639 at 691.466 kb on - strand, within CCNA_00639 at 691.466 kb on - strand, within CCNA_00639 at 691.466 kb on - strand, within CCNA_00639 at 691.494 kb on + strand, within CCNA_00639 at 691.503 kb on + strand, within CCNA_00639 at 691.514 kb on + strand, within CCNA_00639 at 691.542 kb on - strand, within CCNA_00639 at 691.578 kb on - strand, within CCNA_00639 at 691.580 kb on - strand, within CCNA_00639 at 691.584 kb on + strand, within CCNA_00639 at 691.585 kb on + strand, within CCNA_00639 at 691.655 kb on - strand at 691.662 kb on + strand at 691.692 kb on + strand at 691.700 kb on - strand at 691.700 kb on - strand at 691.702 kb on - strand at 691.702 kb on - strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.718 kb on - strand at 691.733 kb on - strand at 691.759 kb on - strand at 691.772 kb on - strand at 691.973 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.008 kb on - strand, within CCNA_00640 at 692.013 kb on - strand, within CCNA_00640 at 692.013 kb on - strand, within CCNA_00640 at 692.013 kb on - strand, within CCNA_00640 at 692.013 kb on - strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.060 kb on - strand, within CCNA_00640 at 692.064 kb on + strand, within CCNA_00640 at 692.067 kb on - strand, within CCNA_00640 at 692.073 kb on - strand, within CCNA_00640 at 692.102 kb on + strand, within CCNA_00640 at 692.102 kb on + strand, within CCNA_00640 at 692.110 kb on - strand, within CCNA_00640 at 692.111 kb on - strand, within CCNA_00640 at 692.113 kb on + strand, within CCNA_00640 at 692.135 kb on + strand, within CCNA_00640 at 692.141 kb on - strand, within CCNA_00640 at 692.143 kb on - strand, within CCNA_00640 at 692.143 kb on - strand, within CCNA_00640 at 692.143 kb on - strand, within CCNA_00640 at 692.143 kb on - strand, within CCNA_00640 at 692.145 kb on + strand at 692.145 kb on + strand at 692.145 kb on + strand at 692.150 kb on + strand at 692.150 kb on + strand at 692.150 kb on + strand at 692.153 kb on - strand at 692.153 kb on - strand at 692.160 kb on - strand at 692.195 kb on + strand at 692.195 kb on + strand at 692.200 kb on + strand at 692.200 kb on + strand at 692.208 kb on - strand at 692.210 kb on + strand at 692.215 kb on + strand at 692.225 kb on - strand at 692.255 kb on + strand at 692.263 kb on - strand at 692.341 kb on + strand at 692.341 kb on + strand at 692.341 kb on + strand at 692.349 kb on - strand at 692.349 kb on - strand at 692.349 kb on - strand at 692.358 kb on - strand at 692.360 kb on + strand at 692.360 kb on + strand at 692.360 kb on + strand at 692.368 kb on - strand at 692.368 kb on - strand at 692.389 kb on - strand at 692.389 kb on - strand at 692.402 kb on + strand at 692.405 kb on - strand at 692.451 kb on + strand, within CCNA_00641 at 692.463 kb on + strand, within CCNA_00641 at 692.484 kb on + strand, within CCNA_00641 at 692.496 kb on + strand, within CCNA_00641 at 692.501 kb on + strand, within CCNA_00641 at 692.503 kb on - strand, within CCNA_00641 at 692.504 kb on - strand, within CCNA_00641 at 692.512 kb on + strand, within CCNA_00641 at 692.515 kb on + strand, within CCNA_00641 at 692.521 kb on - strand, within CCNA_00641 at 692.535 kb on + strand, within CCNA_00641 at 692.547 kb on + strand, within CCNA_00641 at 692.555 kb on - strand, within CCNA_00641 at 692.568 kb on - strand, within CCNA_00641 at 692.593 kb on - strand, within CCNA_00641 at 692.593 kb on - strand, within CCNA_00641 at 692.612 kb on + strand, within CCNA_00641 at 692.625 kb on - strand, within CCNA_00641 at 692.669 kb on - strand at 692.691 kb on - strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.713 kb on + strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.793 kb on + strand, within CCNA_00642 at 692.801 kb on - strand, within CCNA_00642 at 692.822 kb on - strand, within CCNA_00642 at 692.827 kb on - strand, within CCNA_00642 at 692.834 kb on + strand, within CCNA_00642 at 692.867 kb on + strand, within CCNA_00642 at 692.867 kb on + strand, within CCNA_00642 at 692.869 kb on + strand, within CCNA_00642 at 692.875 kb on - strand at 692.929 kb on - strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.020 kb on - strand at 693.027 kb on - strand at 693.066 kb on - strand at 693.066 kb on - strand at 693.076 kb on + strand at 693.086 kb on + strand at 693.094 kb on - strand at 693.107 kb on + strand at 693.132 kb on + strand at 693.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with sodium fluoride 7.5 mM remove 690,902 - CCNA_00639 0.48 -1.1 690,902 - CCNA_00639 0.48 -0.6 690,902 - CCNA_00639 0.48 +0.6 690,902 - CCNA_00639 0.48 +1.3 690,902 - CCNA_00639 0.48 +0.7 690,902 - CCNA_00639 0.48 -0.7 690,904 + CCNA_00639 0.48 -0.3 690,913 - CCNA_00639 0.48 +0.2 690,919 + +1.9 690,968 - CCNA_00639 0.52 -0.0 690,973 - CCNA_00639 0.52 +0.5 691,012 + CCNA_00639 0.54 +0.1 691,012 + CCNA_00639 0.54 -0.6 691,034 - CCNA_00639 0.56 +0.2 691,045 - CCNA_00639 0.57 -0.7 691,045 - CCNA_00639 0.57 +0.9 691,071 + CCNA_00639 0.58 -0.4 691,083 + CCNA_00639 0.59 +0.1 691,120 - CCNA_00639 0.61 +0.6 691,120 - CCNA_00639 0.61 -0.6 691,125 + CCNA_00639 0.61 -0.3 691,125 + CCNA_00639 0.61 -0.9 691,133 - CCNA_00639 0.62 -1.7 691,133 - CCNA_00639 0.62 +0.9 691,133 - CCNA_00639 0.62 -0.8 691,150 - CCNA_00639 0.63 +0.1 691,205 + CCNA_00639 0.66 -0.2 691,218 - CCNA_00639 0.67 +0.0 691,238 + CCNA_00639 0.68 -0.3 691,238 + CCNA_00639 0.68 +0.0 691,302 - CCNA_00639 0.72 -0.2 691,302 - CCNA_00639 0.72 -0.6 691,364 - CCNA_00639 0.76 -0.2 691,400 - CCNA_00639 0.78 -0.7 691,413 + CCNA_00639 0.79 +1.5 691,421 - CCNA_00639 0.80 +0.1 691,421 - CCNA_00639 0.80 +0.7 691,439 - CCNA_00639 0.81 -0.7 691,458 + CCNA_00639 0.82 +0.2 691,466 - CCNA_00639 0.82 +0.2 691,466 - CCNA_00639 0.82 +0.5 691,466 - CCNA_00639 0.82 +0.4 691,466 - CCNA_00639 0.82 +0.4 691,494 + CCNA_00639 0.84 +0.3 691,503 + CCNA_00639 0.85 -0.9 691,514 + CCNA_00639 0.85 -2.5 691,542 - CCNA_00639 0.87 -0.2 691,578 - CCNA_00639 0.89 -1.8 691,580 - CCNA_00639 0.89 +1.2 691,584 + CCNA_00639 0.90 -2.5 691,585 + CCNA_00639 0.90 +0.6 691,655 - -0.3 691,662 + -1.6 691,692 + +0.0 691,700 - -1.3 691,700 - +1.6 691,702 - +1.1 691,702 - -0.8 691,704 + +0.5 691,704 + +0.8 691,704 + +0.4 691,704 + -0.5 691,704 + +0.4 691,704 + +0.3 691,712 - -0.1 691,712 - -1.0 691,712 - -2.3 691,712 - +0.8 691,712 - -0.8 691,712 - -1.6 691,712 - -0.4 691,712 - +1.9 691,712 - -2.1 691,712 - +0.6 691,718 - +0.2 691,733 - -1.2 691,759 - -0.7 691,772 - +1.0 691,973 + CCNA_00640 0.28 -2.3 692,005 + CCNA_00640 0.39 -1.9 692,005 + CCNA_00640 0.39 -1.7 692,005 + CCNA_00640 0.39 -2.2 692,005 + CCNA_00640 0.39 +0.3 692,005 + CCNA_00640 0.39 -0.9 692,008 - CCNA_00640 0.40 -2.0 692,013 - CCNA_00640 0.42 -0.6 692,013 - CCNA_00640 0.42 -0.8 692,013 - CCNA_00640 0.42 -1.5 692,013 - CCNA_00640 0.42 +1.3 692,038 + CCNA_00640 0.51 +1.6 692,038 + CCNA_00640 0.51 +0.2 692,038 + CCNA_00640 0.51 -0.0 692,038 + CCNA_00640 0.51 -0.7 692,038 + CCNA_00640 0.51 -0.7 692,038 + CCNA_00640 0.51 -1.3 692,038 + CCNA_00640 0.51 +0.2 692,038 + CCNA_00640 0.51 -0.7 692,038 + CCNA_00640 0.51 +0.6 692,038 + CCNA_00640 0.51 -1.5 692,038 + CCNA_00640 0.51 -2.6 692,038 + CCNA_00640 0.51 +0.1 692,038 + CCNA_00640 0.51 -2.0 692,038 + CCNA_00640 0.51 -1.9 692,046 - CCNA_00640 0.54 -0.4 692,046 - CCNA_00640 0.54 -0.9 692,046 - CCNA_00640 0.54 -0.7 692,046 - CCNA_00640 0.54 -1.7 692,046 - CCNA_00640 0.54 -2.6 692,046 - CCNA_00640 0.54 -0.2 692,046 - +0.9 692,046 - CCNA_00640 0.54 -1.6 692,046 - CCNA_00640 0.54 -1.3 692,046 - CCNA_00640 0.54 -0.9 692,046 - CCNA_00640 0.54 -0.9 692,046 - CCNA_00640 0.54 -0.4 692,046 - CCNA_00640 0.54 -2.3 692,046 - CCNA_00640 0.54 -1.5 692,046 - CCNA_00640 0.54 -0.4 692,046 - CCNA_00640 0.54 +1.9 692,046 - CCNA_00640 0.54 -2.9 692,046 - CCNA_00640 0.54 -0.6 692,046 - CCNA_00640 0.54 -1.8 692,046 - CCNA_00640 0.54 -0.4 692,046 - CCNA_00640 0.54 -0.4 692,046 - CCNA_00640 0.54 -1.2 692,046 - CCNA_00640 0.54 -0.6 692,060 - CCNA_00640 0.59 +1.1 692,064 + CCNA_00640 0.61 -1.0 692,067 - CCNA_00640 0.62 -1.4 692,073 - CCNA_00640 0.64 -0.4 692,102 + CCNA_00640 0.74 -0.6 692,102 + CCNA_00640 0.74 -2.1 692,110 - CCNA_00640 0.77 -0.6 692,111 - CCNA_00640 0.78 +0.1 692,113 + CCNA_00640 0.78 -0.3 692,135 + CCNA_00640 0.86 -2.4 692,141 - CCNA_00640 0.88 -1.0 692,143 - CCNA_00640 0.89 +1.2 692,143 - CCNA_00640 0.89 +0.9 692,143 - CCNA_00640 0.89 +0.7 692,143 - CCNA_00640 0.89 +1.0 692,145 + -1.6 692,145 + -0.6 692,145 + -0.4 692,150 + -0.7 692,150 + -1.1 692,150 + -0.9 692,153 - +0.0 692,153 - +3.2 692,160 - -1.9 692,195 + -1.0 692,195 + -1.1 692,200 + -2.1 692,200 + -1.0 692,208 - +0.6 692,210 + +2.9 692,215 + -1.3 692,225 - +0.1 692,255 + +0.5 692,263 - -1.4 692,341 + -2.7 692,341 + -0.7 692,341 + +0.4 692,349 - -0.8 692,349 - -1.2 692,349 - -3.5 692,358 - +0.1 692,360 + +0.1 692,360 + +0.6 692,360 + -1.2 692,368 - +0.1 692,368 - -0.6 692,389 - -1.4 692,389 - -1.1 692,402 + -2.1 692,405 - +0.4 692,451 + CCNA_00641 0.25 +1.9 692,463 + CCNA_00641 0.29 -0.9 692,484 + CCNA_00641 0.36 -1.4 692,496 + CCNA_00641 0.40 -1.3 692,501 + CCNA_00641 0.42 +0.7 692,503 - CCNA_00641 0.43 +0.9 692,504 - CCNA_00641 0.43 +0.4 692,512 + CCNA_00641 0.46 +1.0 692,515 + CCNA_00641 0.47 -2.1 692,521 - CCNA_00641 0.49 -0.6 692,535 + CCNA_00641 0.54 -0.4 692,547 + CCNA_00641 0.58 -0.3 692,555 - CCNA_00641 0.60 -2.8 692,568 - CCNA_00641 0.65 -3.6 692,593 - CCNA_00641 0.73 -1.0 692,593 - CCNA_00641 0.73 -2.5 692,612 + CCNA_00641 0.79 -0.6 692,625 - CCNA_00641 0.84 -1.6 692,669 - -1.5 692,691 - CCNA_00642 0.19 -0.9 692,712 + CCNA_00642 0.27 -1.6 692,712 + CCNA_00642 0.27 -2.1 692,712 + CCNA_00642 0.27 -2.2 692,713 + CCNA_00642 0.28 +0.3 692,721 - CCNA_00642 0.31 +0.6 692,721 - CCNA_00642 0.31 -0.4 692,721 - CCNA_00642 0.31 -0.2 692,721 - CCNA_00642 0.31 -1.0 692,721 - CCNA_00642 0.31 +0.1 692,721 - CCNA_00642 0.31 -1.1 692,721 - CCNA_00642 0.31 -2.0 692,793 + CCNA_00642 0.59 -0.5 692,801 - CCNA_00642 0.62 +1.9 692,822 - CCNA_00642 0.70 -0.0 692,827 - CCNA_00642 0.72 -2.6 692,834 + CCNA_00642 0.74 -1.2 692,867 + CCNA_00642 0.87 +0.2 692,867 + CCNA_00642 0.87 -0.2 692,869 + CCNA_00642 0.88 -0.2 692,875 - -0.2 692,929 - -0.1 693,001 + -0.1 693,001 + +1.5 693,001 + +1.3 693,001 + -1.6 693,001 + -0.3 693,001 + -2.4 693,009 - -0.4 693,009 - -1.8 693,009 - +0.9 693,009 - -1.8 693,020 - -0.8 693,027 - -1.6 693,066 - -1.4 693,066 - -0.1 693,076 + +0.7 693,086 + -0.2 693,094 - -1.0 693,107 + +0.4 693,132 + -0.2 693,135 - -0.9
Or see this region's nucleotide sequence