Experiment: N-Acetyl-D-glucosamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00920 and CA265_RS00925 are separated by 150 nucleotides CA265_RS00925 and CA265_RS00930 are separated by 88 nucleotides
CA265_RS00920: CA265_RS00920 - hypothetical protein, at 227,711 to 228,439
_RS00920
CA265_RS00925: CA265_RS00925 - hypothetical protein, at 228,590 to 229,051
_RS00925
CA265_RS00930: CA265_RS00930 - CusA/CzcA family heavy metal efflux RND transporter, at 229,140 to 233,504
_RS00930
Position (kb) 228
229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 227.613 kb on + strand at 227.648 kb on + strand at 227.649 kb on - strand at 227.807 kb on - strand, within CA265_RS00920 at 227.853 kb on + strand, within CA265_RS00920 at 227.949 kb on + strand, within CA265_RS00920 at 227.949 kb on + strand, within CA265_RS00920 at 227.956 kb on + strand, within CA265_RS00920 at 227.966 kb on - strand, within CA265_RS00920 at 228.068 kb on + strand, within CA265_RS00920 at 228.069 kb on - strand, within CA265_RS00920 at 228.069 kb on - strand, within CA265_RS00920 at 228.091 kb on - strand, within CA265_RS00920 at 228.138 kb on - strand, within CA265_RS00920 at 228.196 kb on + strand, within CA265_RS00920 at 228.255 kb on + strand, within CA265_RS00920 at 228.272 kb on - strand, within CA265_RS00920 at 228.295 kb on + strand, within CA265_RS00920 at 228.296 kb on - strand, within CA265_RS00920 at 228.301 kb on - strand, within CA265_RS00920 at 228.313 kb on - strand, within CA265_RS00920 at 228.357 kb on - strand, within CA265_RS00920 at 228.370 kb on + strand at 228.380 kb on - strand at 228.430 kb on - strand at 228.432 kb on - strand at 228.451 kb on + strand at 228.455 kb on + strand at 228.493 kb on + strand at 228.551 kb on + strand at 228.578 kb on - strand at 228.659 kb on + strand, within CA265_RS00925 at 228.662 kb on - strand, within CA265_RS00925 at 228.683 kb on - strand, within CA265_RS00925 at 228.736 kb on + strand, within CA265_RS00925 at 228.754 kb on + strand, within CA265_RS00925 at 228.754 kb on + strand, within CA265_RS00925 at 228.824 kb on + strand, within CA265_RS00925 at 228.901 kb on + strand, within CA265_RS00925 at 228.901 kb on + strand, within CA265_RS00925 at 228.902 kb on - strand, within CA265_RS00925 at 228.967 kb on - strand, within CA265_RS00925 at 229.114 kb on - strand at 229.114 kb on - strand at 229.148 kb on + strand at 229.148 kb on + strand at 229.224 kb on + strand at 229.240 kb on + strand at 229.240 kb on + strand at 229.319 kb on + strand at 229.331 kb on - strand at 229.359 kb on - strand at 229.449 kb on + strand at 229.449 kb on + strand at 229.450 kb on - strand at 229.561 kb on - strand at 229.567 kb on - strand at 229.590 kb on + strand, within CA265_RS00930 at 229.591 kb on - strand, within CA265_RS00930 at 229.591 kb on - strand, within CA265_RS00930 at 229.598 kb on + strand, within CA265_RS00930 at 229.599 kb on - strand, within CA265_RS00930 at 229.599 kb on - strand, within CA265_RS00930 at 229.603 kb on - strand, within CA265_RS00930 at 229.603 kb on - strand, within CA265_RS00930 at 229.603 kb on - strand, within CA265_RS00930 at 229.603 kb on - strand, within CA265_RS00930 at 229.622 kb on + strand, within CA265_RS00930 at 229.642 kb on + strand, within CA265_RS00930 at 229.757 kb on + strand, within CA265_RS00930 at 229.812 kb on + strand, within CA265_RS00930 at 229.839 kb on + strand, within CA265_RS00930 at 229.945 kb on + strand, within CA265_RS00930 at 229.946 kb on - strand, within CA265_RS00930 at 229.986 kb on - strand, within CA265_RS00930 at 230.050 kb on + strand, within CA265_RS00930
Per-strain Table
Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N) remove 227,613 + +0.6 227,648 + +0.1 227,649 - +0.3 227,807 - CA265_RS00920 0.13 -0.1 227,853 + CA265_RS00920 0.19 -0.8 227,949 + CA265_RS00920 0.33 +0.6 227,949 + CA265_RS00920 0.33 +1.1 227,956 + CA265_RS00920 0.34 -1.2 227,966 - CA265_RS00920 0.35 +0.5 228,068 + CA265_RS00920 0.49 +1.1 228,069 - CA265_RS00920 0.49 -0.2 228,069 - CA265_RS00920 0.49 +1.4 228,091 - CA265_RS00920 0.52 +0.1 228,138 - CA265_RS00920 0.59 -0.5 228,196 + CA265_RS00920 0.67 -0.5 228,255 + CA265_RS00920 0.75 +0.7 228,272 - CA265_RS00920 0.77 -0.1 228,295 + CA265_RS00920 0.80 -0.7 228,296 - CA265_RS00920 0.80 -0.2 228,301 - CA265_RS00920 0.81 +0.1 228,313 - CA265_RS00920 0.83 -0.1 228,357 - CA265_RS00920 0.89 +1.7 228,370 + +0.1 228,380 - -3.1 228,430 - -1.6 228,432 - +0.6 228,451 + -0.5 228,455 + -0.8 228,493 + +0.2 228,551 + -1.2 228,578 - +0.9 228,659 + CA265_RS00925 0.15 -0.9 228,662 - CA265_RS00925 0.16 +0.0 228,683 - CA265_RS00925 0.20 +1.8 228,736 + CA265_RS00925 0.32 +0.1 228,754 + CA265_RS00925 0.35 +1.8 228,754 + CA265_RS00925 0.35 +0.7 228,824 + CA265_RS00925 0.51 +1.1 228,901 + CA265_RS00925 0.67 +0.2 228,901 + CA265_RS00925 0.67 +0.8 228,902 - CA265_RS00925 0.68 +1.1 228,967 - CA265_RS00925 0.82 +1.1 229,114 - +0.6 229,114 - +0.1 229,148 + +0.4 229,148 + +1.7 229,224 + -1.8 229,240 + -0.1 229,240 + +0.5 229,319 + -0.3 229,331 - -0.4 229,359 - +0.6 229,449 + +0.8 229,449 + +0.1 229,450 - -0.4 229,561 - -0.4 229,567 - +0.3 229,590 + CA265_RS00930 0.10 -0.5 229,591 - CA265_RS00930 0.10 +2.2 229,591 - CA265_RS00930 0.10 +0.4 229,598 + CA265_RS00930 0.10 +0.7 229,599 - CA265_RS00930 0.11 +0.8 229,599 - CA265_RS00930 0.11 -0.2 229,603 - CA265_RS00930 0.11 -0.8 229,603 - CA265_RS00930 0.11 -0.8 229,603 - CA265_RS00930 0.11 +0.4 229,603 - CA265_RS00930 0.11 -0.8 229,622 + CA265_RS00930 0.11 +0.4 229,642 + CA265_RS00930 0.12 -0.0 229,757 + CA265_RS00930 0.14 -0.3 229,812 + CA265_RS00930 0.15 -1.6 229,839 + CA265_RS00930 0.16 +0.3 229,945 + CA265_RS00930 0.18 -0.6 229,946 - CA265_RS00930 0.18 +0.0 229,986 - CA265_RS00930 0.19 +0.1 230,050 + CA265_RS00930 0.21 -0.1
Or see this region's nucleotide sequence